Home Research Services Publications People Teaching Job Opening News Lab Only
Online Services

I-TASSER QUARK LOMETS COACH COFACTOR MUSTER SEGMER FG-MD ModRefiner REMO SPRING COTH BSpred SVMSEQ ANGLOR BSP-SLIM SAXSTER ThreaDom EvoDesign GPCR-I-TASSER BindProf BindProfX ResQ IonCom STRUM

TM-score TM-align MMalign NWalign EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot I-TASSER-MR

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF CASP7 CASP8 CASP9 CASP10 CASP11 CASP12


3DRobot is a program devoted for automated generation of diverse and well-packed protein structure decoys. Given a native structure as input, 3DRobot first identifies diverse structure scaffolds from a non-redundant PDB library. Restraint-free fragment reassembly simulations are then performed to construct diverse full-length models. The final decoys are further refined at atomic-level by a two-step iterative energy minimization procedure to improve the hydrogen-binding networks and steric overlaps of the structures. 3DRobot aims to provide high-quality protein structural decoy sets for designing and training protein folding force field and folding simulation methods (>> More about the server ...)


[Output example] [Forum] [About]
Please copy and paste your native structure below in PDB format. Sample PDB input

Or upload the native PDB file:

Number of decoys: (Recommended range [10, 1000])

RMSD (or TM-score) cutoff: RMSD (Recommended range [5, 20]Å) TM-score (Recommended range [0.1, 0.9])

Email: (mandatory, where results will be sent to. Only academic email accounts are acceptable.)

ID: (optional, your given name to this protein)


3DRobot Resource


Reference:

yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218