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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP TM-fold DECOYS POTENTIAL RW HPSF CASP7 CASP8 CASP9 CASP10 CASP11 CASP12

Search BioLiP database7331 records returned with your search. Click here to export your searching results in CSV format .
Hover over the Site # to view the binding site residues; Hover over the Ligand to view the ligand name; Hover over the GO terms to view all go terms.
Click the BioLiP ID to show the detailed information of the binding site.


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BioLiP ID PDB
(Resolution Å)
Site # Ligand EC number GO terms UniProt PubMed Binding affinity
BL0000079 17gsA (1.9) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 N/A Kd=10000nM, from BindingDB
BL0000080 17gsB (1.9) BS01 GTX 2.5.1.18 GO:0000302 ... P09211 N/A Kd=10000nM, from BindingDB
BL0000081 181lA (1.8) BS01 BNZ 3.2.1.17 GO:0003796 ... P00720 7612599 Ka=5700M^-1, from Binding MOAD
Kd=175000nM, from BindingDB
BL0000082 182lA (1.8) BS01 BZF 3.2.1.17 GO:0003796 ... P00720 7612599 Ka=8900M^-1, from Binding MOAD
Kd=112000nM, from BindingDB
BL0000083 183lA (1.8) BS01 DEN 3.2.1.17 GO:0003796 ... P00720 7612599 Ka=5170M^-1, from Binding MOAD
Kd=193000nM, from BindingDB
BL0000084 184lA (1.8) BS01 I4B 3.2.1.17 GO:0003796 ... P00720 7612599 Ka=51000M^-1, from Binding MOAD
Kd=19000nM, from BindingDB
BL0000085 185lA (1.8) BS01 IND 3.2.1.17 GO:0003796 ... P00720 7612599 Kd=289uM, from Binding MOAD
Kd=290000nM, from BindingDB
BL0000086 186lA (1.8) BS01 N4B 3.2.1.17 GO:0003796 ... P00720 7612599 Kd=14uM, from Binding MOAD
Kd=14000nM, from BindingDB
BL0000087 187lA (1.8) BS01 PXY 3.2.1.17 GO:0003796 ... P00720 7612599 Kd=422uM, from Binding MOAD
Kd=422000nM, from BindingDB
BL0000088 188lA (1.8) BS01 OXE 3.2.1.17 GO:0003796 ... P00720 7612599 Kd=469uM, from Binding MOAD
Kd=470000nM, from BindingDB
BL0000287 1a28A (1.8) BS01 STR N/A GO:0003677 ... P06401 9620806 Kd=3.4-10.4nM, from BindingDB
EC50=0.1-15.2nM, from BindingDB
IC50=0.2-17nM, from BindingDB
BL0000288 1a28B (1.8) BS01 STR N/A GO:0003677 ... P06401 9620806 Kd=3.4-10.4nM, from BindingDB
EC50=0.1-15.2nM, from BindingDB
IC50=0.2-17nM, from BindingDB
BL0000293 1a29A (2.74) BS05 TFP N/A GO:0000922 ... P62157 9799490 Kd=1000nM, from BindingDB
BL0000294 1a29A (2.74) BS06 TFP N/A GO:0000922 ... P62157 9799490 Kd=1000nM, from BindingDB
BL0000349 1a3kA (2.1) BS01 GAL N/A GO:0030246 P17931 9582341 Kd=4e+06nM, from BindingDB
BL0000452 1a4gA (2.2) BS02 ZMR 3.2.1.18 GO:0004308 ... P27907 9526556 IC50=0.004uM, from Binding MOAD
IC50=0.004uM, from PDBbind-CN
Kd=0.1nM, from BindingDB
IC50=1.7-20nM, from BindingDB
BL0000454 1a4gB (2.2) BS02 ZMR 3.2.1.18 GO:0004308 ... P27907 9526556 IC50=0.004uM, from Binding MOAD
IC50=0.004uM, from PDBbind-CN
Kd=0.1nM, from BindingDB
IC50=1.7-20nM, from BindingDB
BL0000477 1a4qA (1.9) BS02 DPC 3.2.1.18 GO:0004308 ... P27907 9526556 IC50=3.6uM, from Binding MOAD
IC50=3.6uM, from PDBbind-CN
IC50=2000-3600nM, from BindingDB
BL0000479 1a4qB (1.9) BS02 DPC 3.2.1.18 GO:0004308 ... P27907 9526556 IC50=3.6uM, from Binding MOAD
IC50=3.6uM, from PDBbind-CN
IC50=2000-3600nM, from BindingDB
BL0000494 1a52A (2.8) BS01 EST N/A GO:0003677 ... P03372 9600906 Kd=0.113-100nM, from BindingDB
Kd<0.003-0.87nM, from BindingDB
EC50=0.007-50nM, from BindingDB
IC50=0.01-46nM, from BindingDB
BL0000495 1a52B (2.8) BS01 EST N/A GO:0003677 ... P03372 9600906 Kd=0.113-100nM, from BindingDB
Kd<0.003-0.87nM, from BindingDB
EC50=0.007-50nM, from BindingDB
IC50=0.01-46nM, from BindingDB
BL0000628 1a72A (2.6) BS03 PAD 1.1.1.1 GO:0000166 ... P00327 9649310 Kd=21000nM, from BindingDB
BL0000658 1a7aA (2.8) BS02 ADC 3.3.1.1 GO:0000096 ... P23526 9586999 Kd=49nM, from BindingDB
IC50=5830-8700nM, from BindingDB
BL0000662 1a7aB (2.8) BS03 ADC 3.3.1.1 GO:0000096 ... P23526 9586999 Kd=49nM, from BindingDB
IC50=5830-8700nM, from BindingDB
BL0000754 1a8iA (1.78) BS01 GLS 2.4.1.1 GO:0000166 ... P00489 9568898 Ki=3uM, from Binding MOAD
Ki=3.0uM, from PDBbind-CN
Kd=3100-105000nM, from BindingDB
BL0000796 1a8tA (2.55) BS03 061 3.5.2.6 GO:0008270 ... P25910 9545432 Ki=1.6uM, from PDBbind-CN
IC50=1900nM, from BindingDB
BL0000869 1a9uA (2.5) BS01 SB2 2.7.1.- GO:0000077 ... Q16539 9753691 IC50=0.048uM, from PDBbind-CN
Kd=57nM, from BindingDB
Kd=4.1-12000nM, from BindingDB
EC50=60nM, from BindingDB
IC50=10-7000nM, from BindingDB
BL0000930 1aaqA (2.5) BS01 PSI N/A GO:0004190 ... P03367 1637805 Ki=3nM, from Binding MOAD
Ki=4.0nM, from PDBbind-CN
Kd=18nM, from BindingDB
BL0000931 1aaqB (2.5) BS01 PSI N/A GO:0004190 ... P03367 1637805 Ki=3nM, from Binding MOAD
Ki=4.0nM, from PDBbind-CN
Kd=18nM, from BindingDB
BL0000940 1ab8A (2.2) BS01 FOK 4.6.1.1 GO:0009190 ... P26769 9069282 EC50<2000nM, from BindingDB

                                                                                                                                                                                                                                                                                                                                             

Reference:
Jianyi Yang, Ambrish Roy and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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