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Search BioLiP database

Search BioLiP by



    PDB ID e.g. 1a69
  Ligand ID e.g. C2E
  UniProt ID e.g. P0ABP8
  BioLiP ID e.g. 0000574
  EC number e.g. 2.4.2.1
  GO term e.g. 0042802
  Ligand name e.g. CYCLIC DI-GMP
  With binding affinity data Please check this box to restrict your search to entries that have binding affinity data


  


Note:

  • Ligand ID: This can be the standard 3-letter code of ligand (mmCIF format) (e.g. "C2E"); metal ion names (e.g., "Ca", "Na"); or the two names created in BioLiP (to avoid conflicts with the existing 3-letter ligand codes): NUC (for nucleic acids), and III (for peptide).
  • GO term: Please ignore the 'GO:' in GO terms and just leave the numbers.
  • Ligand name: The name will be searched in ligand chemical names/synonyms, which are curated from ChEBI, PubChem, and PDB databases. Click here to show all ligand names/synonyms in BioLiP.
  • Binding affinity: The binding affinity data are collected from the original literature, Binding MOAD, PDBbind-CN, and Binding DB databases.


    Reference:
    Jianyi Yang, Ambrish Roy and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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