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BioLiP
Download all results in tab-seperated text for 121 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1s5l:A (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    2 1s5l:A (3.5) BS02 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    3 1s5l:A (3.5) BS03 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    4 1s5l:A (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    5 1s5l:A (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    6 1s5l:A (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    7 1s5l:A (3.5) BS07 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    8 1s5l:A (3.5) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    9 1s5l:A (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    10 1s5l:A (3.5) BS10 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    11 1s5l:A (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    12 1s5l:B (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    13 1s5l:B (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    14 1s5l:B (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    15 1s5l:B (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    16 1s5l:B (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    17 1s5l:B (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    18 1s5l:B (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    19 1s5l:B (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    20 1s5l:B (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    21 1s5l:B (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    22 1s5l:B (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    23 1s5l:B (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    24 1s5l:B (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    25 1s5l:B (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    26 1s5l:B (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    27 1s5l:B (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    28 1s5l:C (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    29 1s5l:C (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    30 1s5l:C (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    31 1s5l:C (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    32 1s5l:C (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    33 1s5l:C (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    34 1s5l:C (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    35 1s5l:C (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    36 1s5l:C (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    37 1s5l:C (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    38 1s5l:C (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    39 1s5l:C (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    40 1s5l:C (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    41 1s5l:C (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    42 1s5l:D (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    43 1s5l:D (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    44 1s5l:D (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    45 1s5l:D (3.5) BS04 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    46 1s5l:D (3.5) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    47 1s5l:D (3.5) BS06 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    48 1s5l:D (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    49 1s5l:D (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    50 1s5l:D (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    51 1s5l:E (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    52 1s5l:F (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    53 1s5l:H (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    54 1s5l:H (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    55 1s5l:H (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    56 1s5l:H (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    57 1s5l:K (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    58 1s5l:K (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    59 1s5l:M (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    60 1s5l:V (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    61 1s5l:a (3.5) BS01 FE 1.10.3.9 GO:0005506 ... P0A444 14764885
    62 1s5l:a (3.5) BS02 OEC 1.10.3.9 GO:0005506 ... P0A444 14764885
    63 1s5l:a (3.5) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    64 1s5l:a (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    65 1s5l:a (3.5) BS05 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    66 1s5l:a (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    67 1s5l:a (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    68 1s5l:a (3.5) BS08 BCT 1.10.3.9 GO:0005506 ... P0A444 14764885
    69 1s5l:a (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    70 1s5l:a (3.5) BS10 CLA 1.10.3.9 GO:0005506 ... P0A444 14764885
    71 1s5l:a (3.5) BS11 PHO 1.10.3.9 GO:0005506 ... P0A444 14764885
    72 1s5l:b (3.5) BS01 CLA ? GO:0009521 ... Q8DIQ1 14764885
    73 1s5l:b (3.5) BS02 CLA ? GO:0009521 ... Q8DIQ1 14764885
    74 1s5l:b (3.5) BS03 CLA ? GO:0009521 ... Q8DIQ1 14764885
    75 1s5l:b (3.5) BS04 CLA ? GO:0009521 ... Q8DIQ1 14764885
    76 1s5l:b (3.5) BS05 CLA ? GO:0009521 ... Q8DIQ1 14764885
    77 1s5l:b (3.5) BS06 CLA ? GO:0009521 ... Q8DIQ1 14764885
    78 1s5l:b (3.5) BS07 CLA ? GO:0009521 ... Q8DIQ1 14764885
    79 1s5l:b (3.5) BS08 CLA ? GO:0009521 ... Q8DIQ1 14764885
    80 1s5l:b (3.5) BS09 CLA ? GO:0009521 ... Q8DIQ1 14764885
    81 1s5l:b (3.5) BS10 CLA ? GO:0009521 ... Q8DIQ1 14764885
    82 1s5l:b (3.5) BS11 CLA ? GO:0009521 ... Q8DIQ1 14764885
    83 1s5l:b (3.5) BS12 CLA ? GO:0009521 ... Q8DIQ1 14764885
    84 1s5l:b (3.5) BS13 CLA ? GO:0009521 ... Q8DIQ1 14764885
    85 1s5l:b (3.5) BS14 CLA ? GO:0009521 ... Q8DIQ1 14764885
    86 1s5l:b (3.5) BS15 CLA ? GO:0009521 ... Q8DIQ1 14764885
    87 1s5l:b (3.5) BS16 CLA ? GO:0009521 ... Q8DIQ1 14764885
    88 1s5l:c (3.5) BS01 CLA ? GO:0005737 ... Q8DIF8 14764885
    89 1s5l:c (3.5) BS02 CLA ? GO:0005737 ... Q8DIF8 14764885
    90 1s5l:c (3.5) BS03 CLA ? GO:0005737 ... Q8DIF8 14764885
    91 1s5l:c (3.5) BS04 CLA ? GO:0005737 ... Q8DIF8 14764885
    92 1s5l:c (3.5) BS05 CLA ? GO:0005737 ... Q8DIF8 14764885
    93 1s5l:c (3.5) BS06 CLA ? GO:0005737 ... Q8DIF8 14764885
    94 1s5l:c (3.5) BS07 CLA ? GO:0005737 ... Q8DIF8 14764885
    95 1s5l:c (3.5) BS08 CLA ? GO:0005737 ... Q8DIF8 14764885
    96 1s5l:c (3.5) BS09 CLA ? GO:0005737 ... Q8DIF8 14764885
    97 1s5l:c (3.5) BS10 CLA ? GO:0005737 ... Q8DIF8 14764885
    98 1s5l:c (3.5) BS11 CLA ? GO:0005737 ... Q8DIF8 14764885
    99 1s5l:c (3.5) BS12 CLA ? GO:0005737 ... Q8DIF8 14764885
    100 1s5l:c (3.5) BS13 CLA ? GO:0005737 ... Q8DIF8 14764885
    101 1s5l:c (3.5) BS14 CLA ? GO:0005737 ... Q8DIF8 14764885
    102 1s5l:d (3.5) BS01 FE 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    103 1s5l:d (3.5) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    104 1s5l:d (3.5) BS03 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    105 1s5l:d (3.5) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    106 1s5l:d (3.5) BS05 BCT 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    107 1s5l:d (3.5) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    108 1s5l:d (3.5) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    109 1s5l:d (3.5) BS08 PHO 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    110 1s5l:d (3.5) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 14764885
    111 1s5l:e (3.5) BS01 HEC ? GO:0005506 ... Q8DIP0 14764885
    112 1s5l:f (3.5) BS01 HEC ? GO:0005506 ... Q8DIN9 14764885
    113 1s5l:h (3.5) BS01 CLA ? GO:0009523 ... Q8DJ43 14764885
    114 1s5l:h (3.5) BS02 CLA ? GO:0009523 ... Q8DJ43 14764885
    115 1s5l:h (3.5) BS03 CLA ? GO:0009523 ... Q8DJ43 14764885
    116 1s5l:h (3.5) BS04 CLA ? GO:0009523 ... Q8DJ43 14764885
    117 1s5l:i (3.5) BS01 CLA ? GO:0005737 ... Q8DJZ6 14764885
    118 1s5l:k (3.5) BS01 CLA ? GO:0009523 ... Q9F1K9 14764885
    119 1s5l:k (3.5) BS02 CLA ? GO:0009523 ... Q9F1K9 14764885
    120 1s5l:m (3.5) BS01 CLA ? GO:0005737 ... Q8DHA7 14764885
    121 1s5l:v (3.5) BS01 HEC ? GO:0005506 ... P0A386 14764885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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