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BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3cmv:A (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    2 3cmv:A (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    3 3cmv:A (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    4 3cmv:A (4.3) BS04 ANP ? GO:0000166 ... P0A7G6 18497818
    5 3cmv:A (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    6 3cmv:A (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    7 3cmv:A (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    8 3cmv:B (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    9 3cmv:B (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    10 3cmv:B (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    11 3cmv:B (4.3) BS04 ANP ? GO:0000166 ... P0A7G6 18497818
    12 3cmv:B (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    13 3cmv:B (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    14 3cmv:B (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    15 3cmv:C (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    16 3cmv:C (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    17 3cmv:C (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    18 3cmv:C (4.3) BS04 MG ? GO:0000166 ... P0A7G6 18497818
    19 3cmv:C (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    20 3cmv:C (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    21 3cmv:C (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    22 3cmv:C (4.3) BS08 ANP ? GO:0000166 ... P0A7G6 18497818
    23 3cmv:D (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    24 3cmv:D (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    25 3cmv:D (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    26 3cmv:D (4.3) BS04 MG ? GO:0000166 ... P0A7G6 18497818
    27 3cmv:D (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    28 3cmv:D (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    29 3cmv:D (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    30 3cmv:D (4.3) BS08 ANP ? GO:0000166 ... P0A7G6 18497818
    31 3cmv:E (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    32 3cmv:E (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    33 3cmv:E (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    34 3cmv:E (4.3) BS04 MG ? GO:0000166 ... P0A7G6 18497818
    35 3cmv:E (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    36 3cmv:E (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    37 3cmv:E (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    38 3cmv:E (4.3) BS08 ANP ? GO:0000166 ... P0A7G6 18497818
    39 3cmv:F (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    40 3cmv:F (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    41 3cmv:F (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    42 3cmv:F (4.3) BS04 ANP ? GO:0000166 ... P0A7G6 18497818
    43 3cmv:F (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    44 3cmv:F (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    45 3cmv:F (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    46 3cmv:G (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    47 3cmv:G (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    48 3cmv:G (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    49 3cmv:G (4.3) BS04 ANP ? GO:0000166 ... P0A7G6 18497818
    50 3cmv:G (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    51 3cmv:G (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    52 3cmv:G (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    53 3cmv:H (4.3) BS01 MG ? GO:0000166 ... P0A7G6 18497818
    54 3cmv:H (4.3) BS02 MG ? GO:0000166 ... P0A7G6 18497818
    55 3cmv:H (4.3) BS03 MG ? GO:0000166 ... P0A7G6 18497818
    56 3cmv:H (4.3) BS04 ANP ? GO:0000166 ... P0A7G6 18497818
    57 3cmv:H (4.3) BS05 ANP ? GO:0000166 ... P0A7G6 18497818
    58 3cmv:H (4.3) BS06 ANP ? GO:0000166 ... P0A7G6 18497818
    59 3cmv:H (4.3) BS07 ANP ? GO:0000166 ... P0A7G6 18497818
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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