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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ete:A (3.0) BS01 GLU 1.4.1.3 GO:0000166 ... P00366 19531491
    2 3ete:A (3.0) BS02 NDP 1.4.1.3 GO:0000166 ... P00366 19531491
    3 3ete:A (3.0) BS03 GTP 1.4.1.3 GO:0000166 ... P00366 19531491
    4 3ete:A (3.0) BS04 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    5 3ete:B (3.0) BS01 GLU 1.4.1.3 GO:0000166 ... P00366 19531491
    6 3ete:B (3.0) BS02 NDP 1.4.1.3 GO:0000166 ... P00366 19531491
    7 3ete:B (3.0) BS03 GTP 1.4.1.3 GO:0000166 ... P00366 19531491
    8 3ete:B (3.0) BS04 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    9 3ete:C (3.0) BS01 GLU 1.4.1.3 GO:0000166 ... P00366 19531491
    10 3ete:C (3.0) BS02 NDP 1.4.1.3 GO:0000166 ... P00366 19531491
    11 3ete:C (3.0) BS03 GTP 1.4.1.3 GO:0000166 ... P00366 19531491
    12 3ete:C (3.0) BS04 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    13 3ete:C (3.0) BS05 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    14 3ete:D (3.0) BS01 GLU 1.4.1.3 GO:0000166 ... P00366 19531491
    15 3ete:D (3.0) BS02 NDP 1.4.1.3 GO:0000166 ... P00366 19531491
    16 3ete:D (3.0) BS03 GTP 1.4.1.3 GO:0000166 ... P00366 19531491
    17 3ete:D (3.0) BS04 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    18 3ete:E (3.0) BS01 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    19 3ete:E (3.0) BS02 GLU 1.4.1.3 GO:0000166 ... P00366 19531491
    20 3ete:E (3.0) BS03 NDP 1.4.1.3 GO:0000166 ... P00366 19531491
    21 3ete:E (3.0) BS04 GTP 1.4.1.3 GO:0000166 ... P00366 19531491
    22 3ete:F (3.0) BS01 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    23 3ete:F (3.0) BS02 GLU 1.4.1.3 GO:0000166 ... P00366 19531491
    24 3ete:F (3.0) BS03 NDP 1.4.1.3 GO:0000166 ... P00366 19531491
    25 3ete:F (3.0) BS04 GTP 1.4.1.3 GO:0000166 ... P00366 19531491
    26 3ete:F (3.0) BS05 H3P 1.4.1.3 GO:0000166 ... P00366 19531491
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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