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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3gyr:A (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    2 3gyr:A (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    3 3gyr:A (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    4 3gyr:B (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    5 3gyr:B (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    6 3gyr:B (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    7 3gyr:C (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    8 3gyr:C (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    9 3gyr:C (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    10 3gyr:D (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    11 3gyr:D (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    12 3gyr:D (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    13 3gyr:E (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    14 3gyr:E (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    15 3gyr:E (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    16 3gyr:F (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    17 3gyr:F (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    18 3gyr:F (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    19 3gyr:G (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    20 3gyr:G (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    21 3gyr:G (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    22 3gyr:H (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    23 3gyr:H (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    24 3gyr:H (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    25 3gyr:I (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    26 3gyr:I (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    27 3gyr:I (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    28 3gyr:J (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    29 3gyr:J (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    30 3gyr:J (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    31 3gyr:K (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    32 3gyr:K (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    33 3gyr:K (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    34 3gyr:L (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    35 3gyr:L (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    36 3gyr:L (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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