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BioLiP
Download all results in tab-seperated text for 41 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3jb9:A (3.6) BS01 rna ? GO:0000244 ... O14187 26292707
    2 3jb9:A (3.6) BS02 rna ? GO:0000244 ... O14187 26292707
    3 3jb9:A (3.6) BS03 rna ? GO:0000244 ... O14187 26292707
    4 3jb9:A (3.6) BS04 rna ? GO:0000244 ... O14187 26292707
    5 3jb9:B (3.6) BS01 rna ? GO:0000166 ... O94316 26292707
    6 3jb9:B (3.6) BS02 GDP ? GO:0000166 ... O94316 26292707
    7 3jb9:D (3.6) BS01 rna ? GO:0000243 ... Q9UUC6 26292707
    8 3jb9:E (3.6) BS01 rna ? GO:0000395 ... Q10163 26292707
    9 3jb9:F (3.6) BS01 rna ? GO:0000243 ... O42661 26292707
    10 3jb9:G (3.6) BS01 rna ? GO:0000387 ... O14036 26292707
    11 3jb9:H (3.6) BS01 rna ? GO:0000387 ... Q9USZ3 26292707
    12 3jb9:I (3.6) BS01 rna ? GO:0000387 ... O59734 26292707
    13 3jb9:J (3.6) BS01 rna ? GO:0000387 ... O74966 26292707
    14 3jb9:L (3.6) BS01 rna ? GO:0003723 ... O94620 26292707
    15 3jb9:M (3.6) BS01 rna ? GO:0000398 ... Q09882 26292707
    16 3jb9:M (3.6) BS02 rna ? GO:0000398 ... Q09882 26292707
    17 3jb9:R (3.6) BS01 rna ? GO:0000398 ... P87312 26292707
    18 3jb9:W (3.6) BS01 rna ? GO:0000398 ... P39964 26292707
    19 3jb9:X (3.6) BS01 ADP ? GO:0000184 ... O94508 26292707
    20 3jb9:Y (3.6) BS01 rna ? GO:0003676 ... P87126 26292707
    21 3jb9:Y (3.6) BS02 ZN ? GO:0003676 ... P87126 26292707
    22 3jb9:Z (3.6) BS01 rna ? GO:0000243 ... Q9UUC6 26292707
    23 3jb9:a (3.6) BS01 rna ? GO:0003676 ... O59800 26292707
    24 3jb9:a (3.6) BS02 ZN ? GO:0003676 ... O59800 26292707
    25 3jb9:a (3.6) BS03 ZN ? GO:0003676 ... O59800 26292707
    26 3jb9:b (3.6) BS01 rna ? GO:0000395 ... Q10163 26292707
    27 3jb9:c (3.6) BS01 rna ? GO:0000398 ... Q09909 26292707
    28 3jb9:c (3.6) BS02 ZN ? GO:0000398 ... Q09909 26292707
    29 3jb9:e (3.6) BS01 rna ? GO:0000398 ... O74772 26292707
    30 3jb9:e (3.6) BS02 rna ? GO:0000398 ... O74772 26292707
    31 3jb9:e (3.6) BS03 ZN ? GO:0000398 ... O74772 26292707
    32 3jb9:e (3.6) BS04 ZN ? GO:0000398 ... O74772 26292707
    33 3jb9:e (3.6) BS05 ZN ? GO:0000398 ... O74772 26292707
    34 3jb9:f (3.6) BS01 rna ? GO:0000243 ... O42661 26292707
    35 3jb9:g (3.6) BS01 rna ? GO:0000398 ... O43071 26292707
    36 3jb9:h (3.6) BS01 rna ? GO:0000398 ... P78794 26292707
    37 3jb9:k (3.6) BS01 rna ? GO:0003676 ... Q7LL14 26292707
    38 3jb9:l (3.6) BS01 rna ? GO:0000387 ... O14036 26292707
    39 3jb9:m (3.6) BS01 rna ? GO:0000387 ... Q9USZ3 26292707
    40 3jb9:n (3.6) BS01 rna ? GO:0000387 ... O59734 26292707
    41 3jb9:o (3.6) BS01 rna ? GO:0000387 ... O74966 26292707
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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