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BioLiP
Download all results in tab-seperated text for 132 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3wu2:A (1.9) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 21499260
    2 3wu2:A (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 21499260
    3 3wu2:A (1.9) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    4 3wu2:A (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    5 3wu2:A (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    6 3wu2:A (1.9) BS06 PHO 1.10.3.9 GO:0005506 ... P51765 21499260
    7 3wu2:A (1.9) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 21499260
    8 3wu2:A (1.9) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    9 3wu2:A (1.9) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    10 3wu2:A (1.9) BS10 BCT 1.10.3.9 GO:0005506 ... P51765 21499260
    11 3wu2:B (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 21499260
    12 3wu2:B (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 21499260
    13 3wu2:B (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 21499260
    14 3wu2:B (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 21499260
    15 3wu2:B (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 21499260
    16 3wu2:B (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 21499260
    17 3wu2:B (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 21499260
    18 3wu2:B (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 21499260
    19 3wu2:B (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 21499260
    20 3wu2:B (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 21499260
    21 3wu2:B (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 21499260
    22 3wu2:B (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 21499260
    23 3wu2:B (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 21499260
    24 3wu2:B (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 21499260
    25 3wu2:B (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 21499260
    26 3wu2:B (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 21499260
    27 3wu2:C (1.9) BS01 OEX ? GO:0005737 ... D0VWR7 21499260
    28 3wu2:C (1.9) BS02 CLA ? GO:0005737 ... D0VWR7 21499260
    29 3wu2:C (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 21499260
    30 3wu2:C (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 21499260
    31 3wu2:C (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 21499260
    32 3wu2:C (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 21499260
    33 3wu2:C (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 21499260
    34 3wu2:C (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 21499260
    35 3wu2:C (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 21499260
    36 3wu2:C (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 21499260
    37 3wu2:C (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 21499260
    38 3wu2:C (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 21499260
    39 3wu2:C (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 21499260
    40 3wu2:C (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 21499260
    41 3wu2:D (1.9) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    42 3wu2:D (1.9) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    43 3wu2:D (1.9) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    44 3wu2:D (1.9) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    45 3wu2:D (1.9) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    46 3wu2:D (1.9) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    47 3wu2:D (1.9) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    48 3wu2:D (1.9) BS08 BCT 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    49 3wu2:D (1.9) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    50 3wu2:D (1.9) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    51 3wu2:E (1.9) BS01 HEM ? GO:0005506 ... P12238 21499260
    52 3wu2:F (1.9) BS01 HEM ? GO:0005506 ... P12239 21499260
    53 3wu2:H (1.9) BS01 CLA ? GO:0009523 ... P19052 21499260
    54 3wu2:H (1.9) BS02 CLA ? GO:0009523 ... P19052 21499260
    55 3wu2:H (1.9) BS03 CLA ? GO:0009523 ... P19052 21499260
    56 3wu2:H (1.9) BS04 RRX ? GO:0009523 ... P19052 21499260
    57 3wu2:I (1.9) BS01 CLA ? GO:0005737 ... P12240 21499260
    58 3wu2:J (1.9) BS01 peptide ? GO:0009523 ... Q7DGD4 21499260
    59 3wu2:J (1.9) BS02 MG ? GO:0009523 ... Q7DGD4 21499260
    60 3wu2:K (1.9) BS01 peptide ? GO:0005737 ... P19054 21499260
    61 3wu2:K (1.9) BS02 CLA ? GO:0005737 ... P19054 21499260
    62 3wu2:K (1.9) BS03 CLA ? GO:0005737 ... P19054 21499260
    63 3wu2:O (1.9) BS01 CA ? GO:0009523 ... D0VWR2 21499260
    64 3wu2:V (1.9) BS01 HEM ? GO:0005506 ... P0A387 21499260
    65 3wu2:X (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 21499260
    66 3wu2:Z (1.9) BS01 peptide ? GO:0009523 ... D0VWR5 21499260
    67 3wu2:a (1.9) BS01 OEX 1.10.3.9 GO:0005506 ... P51765 21499260
    68 3wu2:a (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 21499260
    69 3wu2:a (1.9) BS03 BCT 1.10.3.9 GO:0005506 ... P51765 21499260
    70 3wu2:a (1.9) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    71 3wu2:a (1.9) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    72 3wu2:a (1.9) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    73 3wu2:a (1.9) BS07 PHO 1.10.3.9 GO:0005506 ... P51765 21499260
    74 3wu2:a (1.9) BS08 PHO 1.10.3.9 GO:0005506 ... P51765 21499260
    75 3wu2:a (1.9) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    76 3wu2:a (1.9) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 21499260
    77 3wu2:b (1.9) BS01 CLA ? GO:0009521 ... D0VWR1 21499260
    78 3wu2:b (1.9) BS02 CLA ? GO:0009521 ... D0VWR1 21499260
    79 3wu2:b (1.9) BS03 CLA ? GO:0009521 ... D0VWR1 21499260
    80 3wu2:b (1.9) BS04 CLA ? GO:0009521 ... D0VWR1 21499260
    81 3wu2:b (1.9) BS05 CLA ? GO:0009521 ... D0VWR1 21499260
    82 3wu2:b (1.9) BS06 CLA ? GO:0009521 ... D0VWR1 21499260
    83 3wu2:b (1.9) BS07 CLA ? GO:0009521 ... D0VWR1 21499260
    84 3wu2:b (1.9) BS08 CLA ? GO:0009521 ... D0VWR1 21499260
    85 3wu2:b (1.9) BS09 CLA ? GO:0009521 ... D0VWR1 21499260
    86 3wu2:b (1.9) BS10 CLA ? GO:0009521 ... D0VWR1 21499260
    87 3wu2:b (1.9) BS11 CLA ? GO:0009521 ... D0VWR1 21499260
    88 3wu2:b (1.9) BS12 CLA ? GO:0009521 ... D0VWR1 21499260
    89 3wu2:b (1.9) BS13 CLA ? GO:0009521 ... D0VWR1 21499260
    90 3wu2:b (1.9) BS14 CLA ? GO:0009521 ... D0VWR1 21499260
    91 3wu2:b (1.9) BS15 CLA ? GO:0009521 ... D0VWR1 21499260
    92 3wu2:b (1.9) BS16 CLA ? GO:0009521 ... D0VWR1 21499260
    93 3wu2:c (1.9) BS01 OEX ? GO:0005737 ... D0VWR7 21499260
    94 3wu2:c (1.9) BS02 CA ? GO:0005737 ... D0VWR7 21499260
    95 3wu2:c (1.9) BS03 CLA ? GO:0005737 ... D0VWR7 21499260
    96 3wu2:c (1.9) BS04 CLA ? GO:0005737 ... D0VWR7 21499260
    97 3wu2:c (1.9) BS05 CLA ? GO:0005737 ... D0VWR7 21499260
    98 3wu2:c (1.9) BS06 CLA ? GO:0005737 ... D0VWR7 21499260
    99 3wu2:c (1.9) BS07 CLA ? GO:0005737 ... D0VWR7 21499260
    100 3wu2:c (1.9) BS08 CLA ? GO:0005737 ... D0VWR7 21499260
    101 3wu2:c (1.9) BS09 CLA ? GO:0005737 ... D0VWR7 21499260
    102 3wu2:c (1.9) BS10 CLA ? GO:0005737 ... D0VWR7 21499260
    103 3wu2:c (1.9) BS11 CLA ? GO:0005737 ... D0VWR7 21499260
    104 3wu2:c (1.9) BS12 CLA ? GO:0005737 ... D0VWR7 21499260
    105 3wu2:c (1.9) BS13 CLA ? GO:0005737 ... D0VWR7 21499260
    106 3wu2:c (1.9) BS14 CLA ? GO:0005737 ... D0VWR7 21499260
    107 3wu2:c (1.9) BS15 CLA ? GO:0005737 ... D0VWR7 21499260
    108 3wu2:d (1.9) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    109 3wu2:d (1.9) BS02 BCT 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    110 3wu2:d (1.9) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    111 3wu2:d (1.9) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    112 3wu2:d (1.9) BS05 PHO 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    113 3wu2:d (1.9) BS06 PHO 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    114 3wu2:d (1.9) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    115 3wu2:d (1.9) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    116 3wu2:d (1.9) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 21499260
    117 3wu2:e (1.9) BS01 HEM ? GO:0005506 ... P12238 21499260
    118 3wu2:f (1.9) BS01 HEM ? GO:0005506 ... P12239 21499260
    119 3wu2:h (1.9) BS01 CLA ? GO:0009523 ... P19052 21499260
    120 3wu2:h (1.9) BS02 CLA ? GO:0009523 ... P19052 21499260
    121 3wu2:h (1.9) BS03 CLA ? GO:0009523 ... P19052 21499260
    122 3wu2:h (1.9) BS04 RRX ? GO:0009523 ... P19052 21499260
    123 3wu2:i (1.9) BS01 CLA ? GO:0005737 ... P12240 21499260
    124 3wu2:j (1.9) BS01 MG ? GO:0009523 ... Q7DGD4 21499260
    125 3wu2:k (1.9) BS01 peptide ? GO:0005737 ... P19054 21499260
    126 3wu2:k (1.9) BS02 CLA ? GO:0005737 ... P19054 21499260
    127 3wu2:k (1.9) BS03 CLA ? GO:0005737 ... P19054 21499260
    128 3wu2:o (1.9) BS01 CA ? GO:0009523 ... D0VWR2 21499260
    129 3wu2:v (1.9) BS01 HEM ? GO:0005506 ... P0A387 21499260
    130 3wu2:x (1.9) BS01 CLA ? GO:0009523 ... D0VWR4 21499260
    131 3wu2:z (1.9) BS01 peptide ? GO:0009523 ... D0VWR5 21499260
    132 3wu2:z (1.9) BS02 CLA ? GO:0009523 ... D0VWR5 21499260
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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