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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4b61:A (2.402) BS01 78M ? GO:0009279 ... P18895 25084326
    2 4b61:A (2.402) BS02 78M ? GO:0009279 ... P18895 25084326
    3 4b61:A (2.402) BS03 78M ? GO:0009279 ... P18895 25084326
    4 4b61:A (2.402) BS04 78M ? GO:0009279 ... P18895 25084326
    5 4b61:A (2.402) BS05 MG ? GO:0009279 ... P18895 25084326
    6 4b61:A (2.402) BS06 CU ? GO:0009279 ... P18895 25084326
    7 4b61:A (2.402) BS07 78N ? GO:0009279 ... P18895 25084326
    8 4b61:A (2.402) BS08 78N ? GO:0009279 ... P18895 25084326
    9 4b61:A (2.402) BS09 78M ? GO:0009279 ... P18895 25084326
    10 4b61:A (2.402) BS10 78M ? GO:0009279 ... P18895 25084326
    11 4b61:B (2.402) BS01 78M ? GO:0009279 ... P18895 25084326
    12 4b61:B (2.402) BS02 78M ? GO:0009279 ... P18895 25084326
    13 4b61:B (2.402) BS03 78M ? GO:0009279 ... P18895 25084326
    14 4b61:B (2.402) BS04 78M ? GO:0009279 ... P18895 25084326
    15 4b61:B (2.402) BS05 78M ? GO:0009279 ... P18895 25084326
    16 4b61:B (2.402) BS06 CU ? GO:0009279 ... P18895 25084326
    17 4b61:B (2.402) BS07 78M ? GO:0009279 ... P18895 25084326
    18 4b61:B (2.402) BS08 78M ? GO:0009279 ... P18895 25084326
    19 4b61:B (2.402) BS09 78M ? GO:0009279 ... P18895 25084326
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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