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BioLiP
Download all results in tab-seperated text for 34 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4mpo:A (1.9) BS01 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    2 4mpo:A (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    3 4mpo:A (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    4 4mpo:A (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    5 4mpo:B (1.9) BS01 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    6 4mpo:B (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    7 4mpo:B (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    8 4mpo:B (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    9 4mpo:C (1.9) BS01 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    10 4mpo:C (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    11 4mpo:C (1.9) BS03 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    12 4mpo:C (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    13 4mpo:D (1.9) BS01 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    14 4mpo:D (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    15 4mpo:D (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    16 4mpo:D (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    17 4mpo:E (1.9) BS01 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    18 4mpo:E (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    19 4mpo:E (1.9) BS03 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    20 4mpo:E (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    21 4mpo:E (1.9) BS05 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    22 4mpo:F (1.9) BS01 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    23 4mpo:F (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    24 4mpo:F (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    25 4mpo:F (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    26 4mpo:G (1.9) BS01 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    27 4mpo:G (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    28 4mpo:G (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    29 4mpo:G (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    30 4mpo:H (1.9) BS01 AMP 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    31 4mpo:H (1.9) BS02 PO4 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    32 4mpo:H (1.9) BS03 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    33 4mpo:H (1.9) BS04 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275
    34 4mpo:H (1.9) BS05 MG 3.-.-.- GO:0000166 ... A0A0H3MCJ9 24354275

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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