Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 184 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4rku:1 (3.0) BS01 CLA ? GO:0009416 ... E1C9L2 N/A
    2 4rku:1 (3.0) BS02 CLA ? GO:0009416 ... E1C9L2 N/A
    3 4rku:1 (3.0) BS03 CLA ? GO:0009416 ... E1C9L2 N/A
    4 4rku:1 (3.0) BS04 CLA ? GO:0009416 ... E1C9L2 N/A
    5 4rku:1 (3.0) BS05 CLA ? GO:0009416 ... E1C9L2 N/A
    6 4rku:1 (3.0) BS06 CLA ? GO:0009416 ... E1C9L2 N/A
    7 4rku:1 (3.0) BS07 CLA ? GO:0009416 ... E1C9L2 N/A
    8 4rku:1 (3.0) BS08 CLA ? GO:0009416 ... E1C9L2 N/A
    9 4rku:1 (3.0) BS09 CLA ? GO:0009416 ... E1C9L2 N/A
    10 4rku:1 (3.0) BS10 CLA ? GO:0009416 ... E1C9L2 N/A
    11 4rku:1 (3.0) BS11 CLA ? GO:0009416 ... E1C9L2 N/A
    12 4rku:2 (3.0) BS01 CLA ? GO:0009765 ... Q41038 N/A
    13 4rku:2 (3.0) BS02 CLA ? GO:0009765 ... Q41038 N/A
    14 4rku:2 (3.0) BS03 CLA ? GO:0009765 ... Q41038 N/A
    15 4rku:2 (3.0) BS04 CLA ? GO:0009765 ... Q41038 N/A
    16 4rku:2 (3.0) BS05 CLA ? GO:0009765 ... Q41038 N/A
    17 4rku:2 (3.0) BS06 CLA ? GO:0009765 ... Q41038 N/A
    18 4rku:2 (3.0) BS07 CLA ? GO:0009765 ... Q41038 N/A
    19 4rku:2 (3.0) BS08 CLA ? GO:0009765 ... Q41038 N/A
    20 4rku:2 (3.0) BS09 CLA ? GO:0009765 ... Q41038 N/A
    21 4rku:2 (3.0) BS10 CLA ? GO:0009765 ... Q41038 N/A
    22 4rku:2 (3.0) BS11 CLA ? GO:0009765 ... Q41038 N/A
    23 4rku:2 (3.0) BS12 CLA ? GO:0009765 ... Q41038 N/A
    24 4rku:2 (3.0) BS13 CLA ? GO:0009765 ... Q41038 N/A
    25 4rku:3 (3.0) BS01 CLA ? GO:0009416 ... Q32904 N/A
    26 4rku:3 (3.0) BS02 CLA ? GO:0009416 ... Q32904 N/A
    27 4rku:3 (3.0) BS03 CLA ? GO:0009416 ... Q32904 N/A
    28 4rku:3 (3.0) BS04 CLA ? GO:0009416 ... Q32904 N/A
    29 4rku:3 (3.0) BS05 CLA ? GO:0009416 ... Q32904 N/A
    30 4rku:3 (3.0) BS06 CLA ? GO:0009416 ... Q32904 N/A
    31 4rku:3 (3.0) BS07 CLA ? GO:0009416 ... Q32904 N/A
    32 4rku:3 (3.0) BS08 CLA ? GO:0009416 ... Q32904 N/A
    33 4rku:3 (3.0) BS09 CLA ? GO:0009416 ... Q32904 N/A
    34 4rku:3 (3.0) BS10 CLA ? GO:0009416 ... Q32904 N/A
    35 4rku:3 (3.0) BS11 CLA ? GO:0009416 ... Q32904 N/A
    36 4rku:3 (3.0) BS12 CLA ? GO:0009416 ... Q32904 N/A
    37 4rku:3 (3.0) BS13 CLA ? GO:0009416 ... Q32904 N/A
    38 4rku:3 (3.0) BS14 CLA ? GO:0009416 ... Q32904 N/A
    39 4rku:4 (3.0) BS01 CLA ? GO:0009765 ... Q9SQL2 N/A
    40 4rku:4 (3.0) BS02 CLA ? GO:0009765 ... Q9SQL2 N/A
    41 4rku:4 (3.0) BS03 CLA ? GO:0009765 ... Q9SQL2 N/A
    42 4rku:4 (3.0) BS04 CLA ? GO:0009765 ... Q9SQL2 N/A
    43 4rku:4 (3.0) BS05 CLA ? GO:0009765 ... Q9SQL2 N/A
    44 4rku:4 (3.0) BS06 CLA ? GO:0009765 ... Q9SQL2 N/A
    45 4rku:4 (3.0) BS07 CLA ? GO:0009765 ... Q9SQL2 N/A
    46 4rku:4 (3.0) BS08 CLA ? GO:0009765 ... Q9SQL2 N/A
    47 4rku:4 (3.0) BS09 CLA ? GO:0009765 ... Q9SQL2 N/A
    48 4rku:4 (3.0) BS10 CLA ? GO:0009765 ... Q9SQL2 N/A
    49 4rku:4 (3.0) BS11 CLA ? GO:0009765 ... Q9SQL2 N/A
    50 4rku:4 (3.0) BS12 CLA ? GO:0009765 ... Q9SQL2 N/A
    51 4rku:4 (3.0) BS13 CLA ? GO:0009765 ... Q9SQL2 N/A
    52 4rku:4 (3.0) BS14 CLA ? GO:0009765 ... Q9SQL2 N/A
    53 4rku:4 (3.0) BS15 CLA ? GO:0009765 ... Q9SQL2 N/A
    54 4rku:4 (3.0) BS16 G3P ? GO:0009765 ... Q9SQL2 N/A
    55 4rku:A (3.0) BS01 PQN 1.97.1.12 GO:0000287 ... P05310 N/A
    56 4rku:A (3.0) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    57 4rku:A (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    58 4rku:A (3.0) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    59 4rku:A (3.0) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    60 4rku:A (3.0) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    61 4rku:A (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    62 4rku:A (3.0) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    63 4rku:A (3.0) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    64 4rku:A (3.0) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    65 4rku:A (3.0) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    66 4rku:A (3.0) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    67 4rku:A (3.0) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    68 4rku:A (3.0) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    69 4rku:A (3.0) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    70 4rku:A (3.0) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    71 4rku:A (3.0) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    72 4rku:A (3.0) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    73 4rku:A (3.0) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    74 4rku:A (3.0) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    75 4rku:A (3.0) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    76 4rku:A (3.0) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    77 4rku:A (3.0) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    78 4rku:A (3.0) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    79 4rku:A (3.0) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    80 4rku:A (3.0) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    81 4rku:A (3.0) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    82 4rku:A (3.0) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    83 4rku:A (3.0) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    84 4rku:A (3.0) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    85 4rku:A (3.0) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    86 4rku:A (3.0) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    87 4rku:A (3.0) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    88 4rku:A (3.0) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    89 4rku:A (3.0) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    90 4rku:A (3.0) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    91 4rku:A (3.0) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    92 4rku:A (3.0) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    93 4rku:A (3.0) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    94 4rku:A (3.0) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    95 4rku:A (3.0) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    96 4rku:A (3.0) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    97 4rku:A (3.0) BS43 SF4 1.97.1.12 GO:0000287 ... P05310 N/A
    98 4rku:A (3.0) BS44 CL0 1.97.1.12 GO:0000287 ... P05310 N/A
    99 4rku:A (3.0) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    100 4rku:A (3.0) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    101 4rku:A (3.0) BS47 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    102 4rku:A (3.0) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    103 4rku:A (3.0) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    104 4rku:A (3.0) BS50 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    105 4rku:A (3.0) BS51 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    106 4rku:A (3.0) BS52 CLA 1.97.1.12 GO:0000287 ... P05310 N/A
    107 4rku:B (3.0) BS01 peptide 1.97.1.12 GO:0000287 ... P05311 N/A
    108 4rku:B (3.0) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    109 4rku:B (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    110 4rku:B (3.0) BS04 SF4 1.97.1.12 GO:0000287 ... P05311 N/A
    111 4rku:B (3.0) BS05 CL0 1.97.1.12 GO:0000287 ... P05311 N/A
    112 4rku:B (3.0) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    113 4rku:B (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    114 4rku:B (3.0) BS08 PQN 1.97.1.12 GO:0000287 ... P05311 N/A
    115 4rku:B (3.0) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    116 4rku:B (3.0) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    117 4rku:B (3.0) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    118 4rku:B (3.0) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    119 4rku:B (3.0) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    120 4rku:B (3.0) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    121 4rku:B (3.0) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    122 4rku:B (3.0) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    123 4rku:B (3.0) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    124 4rku:B (3.0) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    125 4rku:B (3.0) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    126 4rku:B (3.0) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    127 4rku:B (3.0) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    128 4rku:B (3.0) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    129 4rku:B (3.0) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    130 4rku:B (3.0) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    131 4rku:B (3.0) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    132 4rku:B (3.0) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    133 4rku:B (3.0) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    134 4rku:B (3.0) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    135 4rku:B (3.0) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    136 4rku:B (3.0) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    137 4rku:B (3.0) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    138 4rku:B (3.0) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    139 4rku:B (3.0) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    140 4rku:B (3.0) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    141 4rku:B (3.0) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    142 4rku:B (3.0) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    143 4rku:B (3.0) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    144 4rku:B (3.0) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    145 4rku:B (3.0) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    146 4rku:B (3.0) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    147 4rku:B (3.0) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    148 4rku:B (3.0) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    149 4rku:B (3.0) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    150 4rku:B (3.0) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    151 4rku:B (3.0) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    152 4rku:B (3.0) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    153 4rku:B (3.0) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    154 4rku:B (3.0) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    155 4rku:B (3.0) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 N/A
    156 4rku:C (3.0) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 N/A
    157 4rku:C (3.0) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 N/A
    158 4rku:F (3.0) BS01 CLA ? GO:0009507 ... A0A0H2UKZ4 N/A
    159 4rku:F (3.0) BS02 CLA ? GO:0009507 ... A0A0H2UKZ4 N/A
    160 4rku:F (3.0) BS03 CLA ? GO:0009507 ... A0A0H2UKZ4 N/A
    161 4rku:F (3.0) BS04 CLA ? GO:0009507 ... A0A0H2UKZ4 N/A
    162 4rku:F (3.0) BS05 CLA ? GO:0009507 ... A0A0H2UKZ4 N/A
    163 4rku:G (3.0) BS01 CLA ? GO:0009507 ... P20120 N/A
    164 4rku:G (3.0) BS02 CLA ? GO:0009507 ... P20120 N/A
    165 4rku:G (3.0) BS03 CLA ? GO:0009507 ... P20120 N/A
    166 4rku:G (3.0) BS04 CLA ? GO:0009507 ... P20120 N/A
    167 4rku:G (3.0) BS05 CLA ? GO:0009507 ... P20120 N/A
    168 4rku:H (3.0) BS01 peptide ? GO:0009507 ... E1C9K9 N/A
    169 4rku:H (3.0) BS02 CLA ? GO:0009507 ... E1C9K9 N/A
    170 4rku:H (3.0) BS03 CLA ? GO:0009507 ... E1C9K9 N/A
    171 4rku:H (3.0) BS04 CLA ? GO:0009507 ... E1C9K9 N/A
    172 4rku:J (3.0) BS01 CLA ? GO:0009507 ... D5MAL3 N/A
    173 4rku:J (3.0) BS02 CLA ? GO:0009507 ... D5MAL3 N/A
    174 4rku:J (3.0) BS03 CLA ? GO:0009507 ... D5MAL3 N/A
    175 4rku:J (3.0) BS04 CLA ? GO:0009507 ... D5MAL3 N/A
    176 4rku:K (3.0) BS01 CLA ? GO:0009522 ... E1C9L3 N/A
    177 4rku:K (3.0) BS02 CLA ? GO:0009522 ... E1C9L3 N/A
    178 4rku:L (3.0) BS01 peptide ? GO:0009522 ... E1C9L1 N/A
    179 4rku:L (3.0) BS02 CLA ? GO:0009522 ... E1C9L1 N/A
    180 4rku:L (3.0) BS03 CLA ? GO:0009522 ... E1C9L1 N/A
    181 4rku:L (3.0) BS04 CLA ? GO:0009522 ... E1C9L1 N/A
    182 4rku:L (3.0) BS05 CLA ? GO:0009522 ... E1C9L1 N/A
    183 4rku:L (3.0) BS06 CLA ? GO:0009522 ... E1C9L1 N/A
    184 4rku:L (3.0) BS07 CLA ? GO:0009522 ... E1C9L1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218