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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 384 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4xk8:1 (2.8) BS01 CLA ? GO:0009765 ... Q01667 26023133
    2 4xk8:1 (2.8) BS02 CHL ? GO:0009765 ... Q01667 26023133
    3 4xk8:1 (2.8) BS03 CLA ? GO:0009765 ... Q01667 26023133
    4 4xk8:1 (2.8) BS04 CLA ? GO:0009765 ... Q01667 26023133
    5 4xk8:1 (2.8) BS05 CLA ? GO:0009765 ... Q01667 26023133
    6 4xk8:1 (2.8) BS06 CLA ? GO:0009765 ... Q01667 26023133
    7 4xk8:1 (2.8) BS07 CHL ? GO:0009765 ... Q01667 26023133
    8 4xk8:1 (2.8) BS08 CLA ? GO:0009765 ... Q01667 26023133
    9 4xk8:1 (2.8) BS09 CLA ? GO:0009765 ... Q01667 26023133
    10 4xk8:1 (2.8) BS10 CLA ? GO:0009765 ... Q01667 26023133
    11 4xk8:1 (2.8) BS11 CLA ? GO:0009765 ... Q01667 26023133
    12 4xk8:1 (2.8) BS12 CLA ? GO:0009765 ... Q01667 26023133
    13 4xk8:1 (2.8) BS13 CLA ? GO:0009765 ... Q01667 26023133
    14 4xk8:1 (2.8) BS14 CLA ? GO:0009765 ... Q01667 26023133
    15 4xk8:2 (2.8) BS01 CHL ? GO:0009765 ... Q41038 26023133
    16 4xk8:2 (2.8) BS02 CLA ? GO:0009765 ... Q41038 26023133
    17 4xk8:2 (2.8) BS03 CLA ? GO:0009765 ... Q41038 26023133
    18 4xk8:2 (2.8) BS04 CLA ? GO:0009765 ... Q41038 26023133
    19 4xk8:2 (2.8) BS05 CHL ? GO:0009765 ... Q41038 26023133
    20 4xk8:2 (2.8) BS06 CHL ? GO:0009765 ... Q41038 26023133
    21 4xk8:2 (2.8) BS07 CHL ? GO:0009765 ... Q41038 26023133
    22 4xk8:2 (2.8) BS08 CLA ? GO:0009765 ... Q41038 26023133
    23 4xk8:2 (2.8) BS09 CLA ? GO:0009765 ... Q41038 26023133
    24 4xk8:2 (2.8) BS10 CLA ? GO:0009765 ... Q41038 26023133
    25 4xk8:2 (2.8) BS11 CLA ? GO:0009765 ... Q41038 26023133
    26 4xk8:2 (2.8) BS12 CLA ? GO:0009765 ... Q41038 26023133
    27 4xk8:2 (2.8) BS13 CLA ? GO:0009765 ... Q41038 26023133
    28 4xk8:2 (2.8) BS14 CHL ? GO:0009765 ... Q41038 26023133
    29 4xk8:2 (2.8) BS15 CLA ? GO:0009765 ... Q41038 26023133
    30 4xk8:2 (2.8) BS16 CLA ? GO:0009765 ... Q41038 26023133
    31 4xk8:3 (2.8) BS01 CLA ? GO:0009765 ... Q32904 26023133
    32 4xk8:3 (2.8) BS02 CLA ? GO:0009765 ... Q32904 26023133
    33 4xk8:3 (2.8) BS03 CLA ? GO:0009765 ... Q32904 26023133
    34 4xk8:3 (2.8) BS04 CHL ? GO:0009765 ... Q32904 26023133
    35 4xk8:3 (2.8) BS05 CLA ? GO:0009765 ... Q32904 26023133
    36 4xk8:3 (2.8) BS06 CLA ? GO:0009765 ... Q32904 26023133
    37 4xk8:3 (2.8) BS07 CLA ? GO:0009765 ... Q32904 26023133
    38 4xk8:3 (2.8) BS08 CLA ? GO:0009765 ... Q32904 26023133
    39 4xk8:3 (2.8) BS09 CLA ? GO:0009765 ... Q32904 26023133
    40 4xk8:3 (2.8) BS10 CHL ? GO:0009765 ... Q32904 26023133
    41 4xk8:3 (2.8) BS11 CLA ? GO:0009765 ... Q32904 26023133
    42 4xk8:3 (2.8) BS12 CLA ? GO:0009765 ... Q32904 26023133
    43 4xk8:3 (2.8) BS13 CLA ? GO:0009765 ... Q32904 26023133
    44 4xk8:3 (2.8) BS14 CLA ? GO:0009765 ... Q32904 26023133
    45 4xk8:3 (2.8) BS15 CLA ? GO:0009765 ... Q32904 26023133
    46 4xk8:3 (2.8) BS16 CLA ? GO:0009765 ... Q32904 26023133
    47 4xk8:4 (2.8) BS01 CHL ? GO:0009765 ... Q9SQL2 26023133
    48 4xk8:4 (2.8) BS02 CLA ? GO:0009765 ... Q9SQL2 26023133
    49 4xk8:4 (2.8) BS03 CLA ? GO:0009765 ... Q9SQL2 26023133
    50 4xk8:4 (2.8) BS04 CLA ? GO:0009765 ... Q9SQL2 26023133
    51 4xk8:4 (2.8) BS05 CLA ? GO:0009765 ... Q9SQL2 26023133
    52 4xk8:4 (2.8) BS06 CLA ? GO:0009765 ... Q9SQL2 26023133
    53 4xk8:4 (2.8) BS07 CHL ? GO:0009765 ... Q9SQL2 26023133
    54 4xk8:4 (2.8) BS08 CHL ? GO:0009765 ... Q9SQL2 26023133
    55 4xk8:4 (2.8) BS09 CHL ? GO:0009765 ... Q9SQL2 26023133
    56 4xk8:4 (2.8) BS10 CLA ? GO:0009765 ... Q9SQL2 26023133
    57 4xk8:4 (2.8) BS11 CLA ? GO:0009765 ... Q9SQL2 26023133
    58 4xk8:4 (2.8) BS12 CLA ? GO:0009765 ... Q9SQL2 26023133
    59 4xk8:4 (2.8) BS13 CLA ? GO:0009765 ... Q9SQL2 26023133
    60 4xk8:4 (2.8) BS14 CLA ? GO:0009765 ... Q9SQL2 26023133
    61 4xk8:4 (2.8) BS15 CLA ? GO:0009765 ... Q9SQL2 26023133
    62 4xk8:4 (2.8) BS16 CLA ? GO:0009765 ... Q9SQL2 26023133
    63 4xk8:4 (2.8) BS17 CHL ? GO:0009765 ... Q9SQL2 26023133
    64 4xk8:6 (2.8) BS01 CLA ? GO:0009765 ... Q01667 26023133
    65 4xk8:6 (2.8) BS02 CHL ? GO:0009765 ... Q01667 26023133
    66 4xk8:6 (2.8) BS03 CLA ? GO:0009765 ... Q01667 26023133
    67 4xk8:6 (2.8) BS04 CLA ? GO:0009765 ... Q01667 26023133
    68 4xk8:6 (2.8) BS05 CLA ? GO:0009765 ... Q01667 26023133
    69 4xk8:6 (2.8) BS06 CLA ? GO:0009765 ... Q01667 26023133
    70 4xk8:6 (2.8) BS07 CHL ? GO:0009765 ... Q01667 26023133
    71 4xk8:6 (2.8) BS08 CLA ? GO:0009765 ... Q01667 26023133
    72 4xk8:6 (2.8) BS09 CLA ? GO:0009765 ... Q01667 26023133
    73 4xk8:6 (2.8) BS10 CLA ? GO:0009765 ... Q01667 26023133
    74 4xk8:6 (2.8) BS11 CLA ? GO:0009765 ... Q01667 26023133
    75 4xk8:6 (2.8) BS12 CLA ? GO:0009765 ... Q01667 26023133
    76 4xk8:6 (2.8) BS13 CLA ? GO:0009765 ... Q01667 26023133
    77 4xk8:6 (2.8) BS14 CLA ? GO:0009765 ... Q01667 26023133
    78 4xk8:7 (2.8) BS01 CHL ? GO:0009765 ... Q41038 26023133
    79 4xk8:7 (2.8) BS02 CLA ? GO:0009765 ... Q41038 26023133
    80 4xk8:7 (2.8) BS03 CLA ? GO:0009765 ... Q41038 26023133
    81 4xk8:7 (2.8) BS04 CLA ? GO:0009765 ... Q41038 26023133
    82 4xk8:7 (2.8) BS05 CHL ? GO:0009765 ... Q41038 26023133
    83 4xk8:7 (2.8) BS06 CHL ? GO:0009765 ... Q41038 26023133
    84 4xk8:7 (2.8) BS07 CHL ? GO:0009765 ... Q41038 26023133
    85 4xk8:7 (2.8) BS08 CLA ? GO:0009765 ... Q41038 26023133
    86 4xk8:7 (2.8) BS09 CLA ? GO:0009765 ... Q41038 26023133
    87 4xk8:7 (2.8) BS10 CLA ? GO:0009765 ... Q41038 26023133
    88 4xk8:7 (2.8) BS11 CLA ? GO:0009765 ... Q41038 26023133
    89 4xk8:7 (2.8) BS12 CLA ? GO:0009765 ... Q41038 26023133
    90 4xk8:7 (2.8) BS13 CLA ? GO:0009765 ... Q41038 26023133
    91 4xk8:7 (2.8) BS14 CHL ? GO:0009765 ... Q41038 26023133
    92 4xk8:7 (2.8) BS15 CLA ? GO:0009765 ... Q41038 26023133
    93 4xk8:7 (2.8) BS16 CLA ? GO:0009765 ... Q41038 26023133
    94 4xk8:8 (2.8) BS01 CLA ? GO:0009765 ... Q32904 26023133
    95 4xk8:8 (2.8) BS02 CLA ? GO:0009765 ... Q32904 26023133
    96 4xk8:8 (2.8) BS03 CHL ? GO:0009765 ... Q32904 26023133
    97 4xk8:8 (2.8) BS04 CLA ? GO:0009765 ... Q32904 26023133
    98 4xk8:8 (2.8) BS05 CLA ? GO:0009765 ... Q32904 26023133
    99 4xk8:8 (2.8) BS06 CLA ? GO:0009765 ... Q32904 26023133
    100 4xk8:8 (2.8) BS07 CLA ? GO:0009765 ... Q32904 26023133
    101 4xk8:8 (2.8) BS08 CLA ? GO:0009765 ... Q32904 26023133
    102 4xk8:8 (2.8) BS09 CHL ? GO:0009765 ... Q32904 26023133
    103 4xk8:8 (2.8) BS10 CLA ? GO:0009765 ... Q32904 26023133
    104 4xk8:8 (2.8) BS11 CLA ? GO:0009765 ... Q32904 26023133
    105 4xk8:8 (2.8) BS12 CLA ? GO:0009765 ... Q32904 26023133
    106 4xk8:8 (2.8) BS13 CLA ? GO:0009765 ... Q32904 26023133
    107 4xk8:8 (2.8) BS14 CLA ? GO:0009765 ... Q32904 26023133
    108 4xk8:8 (2.8) BS15 CLA ? GO:0009765 ... Q32904 26023133
    109 4xk8:9 (2.8) BS01 CHL ? GO:0009765 ... Q9SQL2 26023133
    110 4xk8:9 (2.8) BS02 CLA ? GO:0009765 ... Q9SQL2 26023133
    111 4xk8:9 (2.8) BS03 CLA ? GO:0009765 ... Q9SQL2 26023133
    112 4xk8:9 (2.8) BS04 CLA ? GO:0009765 ... Q9SQL2 26023133
    113 4xk8:9 (2.8) BS05 CLA ? GO:0009765 ... Q9SQL2 26023133
    114 4xk8:9 (2.8) BS06 CHL ? GO:0009765 ... Q9SQL2 26023133
    115 4xk8:9 (2.8) BS07 CHL ? GO:0009765 ... Q9SQL2 26023133
    116 4xk8:9 (2.8) BS08 CHL ? GO:0009765 ... Q9SQL2 26023133
    117 4xk8:9 (2.8) BS09 CLA ? GO:0009765 ... Q9SQL2 26023133
    118 4xk8:9 (2.8) BS10 CLA ? GO:0009765 ... Q9SQL2 26023133
    119 4xk8:9 (2.8) BS11 CLA ? GO:0009765 ... Q9SQL2 26023133
    120 4xk8:9 (2.8) BS12 CLA ? GO:0009765 ... Q9SQL2 26023133
    121 4xk8:9 (2.8) BS13 CLA ? GO:0009765 ... Q9SQL2 26023133
    122 4xk8:9 (2.8) BS14 CLA ? GO:0009765 ... Q9SQL2 26023133
    123 4xk8:9 (2.8) BS15 CLA ? GO:0009765 ... Q9SQL2 26023133
    124 4xk8:9 (2.8) BS16 CHL ? GO:0009765 ... Q9SQL2 26023133
    125 4xk8:A (2.8) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    126 4xk8:A (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    127 4xk8:A (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    128 4xk8:A (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    129 4xk8:A (2.8) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    130 4xk8:A (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    131 4xk8:A (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    132 4xk8:A (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    133 4xk8:A (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    134 4xk8:A (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    135 4xk8:A (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    136 4xk8:A (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    137 4xk8:A (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    138 4xk8:A (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    139 4xk8:A (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    140 4xk8:A (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    141 4xk8:A (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    142 4xk8:A (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    143 4xk8:A (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    144 4xk8:A (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    145 4xk8:A (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    146 4xk8:A (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    147 4xk8:A (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    148 4xk8:A (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    149 4xk8:A (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    150 4xk8:A (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    151 4xk8:A (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    152 4xk8:A (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    153 4xk8:A (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    154 4xk8:A (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    155 4xk8:A (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    156 4xk8:A (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    157 4xk8:A (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    158 4xk8:A (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    159 4xk8:A (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    160 4xk8:A (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    161 4xk8:A (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    162 4xk8:A (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    163 4xk8:A (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    164 4xk8:A (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    165 4xk8:A (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    166 4xk8:A (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    167 4xk8:A (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    168 4xk8:A (2.8) BS44 PQN 1.97.1.12 GO:0000287 ... P05310 26023133
    169 4xk8:A (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    170 4xk8:A (2.8) BS46 SF4 1.97.1.12 GO:0000287 ... P05310 26023133
    171 4xk8:A (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    172 4xk8:A (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    173 4xk8:A (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    174 4xk8:A (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    175 4xk8:A (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    176 4xk8:A (2.8) BS52 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    177 4xk8:A (2.8) BS53 CLA 1.97.1.12 GO:0000287 ... P05310 26023133
    178 4xk8:B (2.8) BS01 peptide 1.97.1.12 GO:0000287 ... P05311 26023133
    179 4xk8:B (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    180 4xk8:B (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    181 4xk8:B (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    182 4xk8:B (2.8) BS05 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    183 4xk8:B (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    184 4xk8:B (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    185 4xk8:B (2.8) BS08 SF4 1.97.1.12 GO:0000287 ... P05311 26023133
    186 4xk8:B (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    187 4xk8:B (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    188 4xk8:B (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    189 4xk8:B (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    190 4xk8:B (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    191 4xk8:B (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    192 4xk8:B (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    193 4xk8:B (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    194 4xk8:B (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    195 4xk8:B (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    196 4xk8:B (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    197 4xk8:B (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    198 4xk8:B (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    199 4xk8:B (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 26023133
    200 4xk8:B (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 26023133

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218