Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 196 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4y28:1 (2.8) BS01 CLA ? GO:0009416 ... E1C9L2 26076232
    2 4y28:1 (2.8) BS02 CLA ? GO:0009416 ... E1C9L2 26076232
    3 4y28:1 (2.8) BS03 CLA ? GO:0009416 ... E1C9L2 26076232
    4 4y28:1 (2.8) BS04 CLA ? GO:0009416 ... E1C9L2 26076232
    5 4y28:1 (2.8) BS05 CLA ? GO:0009416 ... E1C9L2 26076232
    6 4y28:1 (2.8) BS06 CLA ? GO:0009416 ... E1C9L2 26076232
    7 4y28:1 (2.8) BS07 CLA ? GO:0009416 ... E1C9L2 26076232
    8 4y28:1 (2.8) BS08 CLA ? GO:0009416 ... E1C9L2 26076232
    9 4y28:1 (2.8) BS09 CHL ? GO:0009416 ... E1C9L2 26076232
    10 4y28:1 (2.8) BS10 CHL ? GO:0009416 ... E1C9L2 26076232
    11 4y28:1 (2.8) BS11 CLA ? GO:0009416 ... E1C9L2 26076232
    12 4y28:1 (2.8) BS12 CLA ? GO:0009416 ... E1C9L2 26076232
    13 4y28:1 (2.8) BS13 CLA ? GO:0009416 ... E1C9L2 26076232
    14 4y28:1 (2.8) BS14 CLA ? GO:0009416 ... E1C9L2 26076232
    15 4y28:2 (2.8) BS01 CLA ? GO:0009416 ... Q41038 26076232
    16 4y28:2 (2.8) BS02 CLA ? GO:0009416 ... Q41038 26076232
    17 4y28:2 (2.8) BS03 CLA ? GO:0009416 ... Q41038 26076232
    18 4y28:2 (2.8) BS04 CLA ? GO:0009416 ... Q41038 26076232
    19 4y28:2 (2.8) BS05 CLA ? GO:0009416 ... Q41038 26076232
    20 4y28:2 (2.8) BS06 CLA ? GO:0009416 ... Q41038 26076232
    21 4y28:2 (2.8) BS07 CLA ? GO:0009416 ... Q41038 26076232
    22 4y28:2 (2.8) BS08 CLA ? GO:0009416 ... Q41038 26076232
    23 4y28:2 (2.8) BS09 CHL ? GO:0009416 ... Q41038 26076232
    24 4y28:2 (2.8) BS10 CHL ? GO:0009416 ... Q41038 26076232
    25 4y28:2 (2.8) BS11 CLA ? GO:0009416 ... Q41038 26076232
    26 4y28:2 (2.8) BS12 CHL ? GO:0009416 ... Q41038 26076232
    27 4y28:2 (2.8) BS13 CLA ? GO:0009416 ... Q41038 26076232
    28 4y28:2 (2.8) BS14 CLA ? GO:0009416 ... Q41038 26076232
    29 4y28:2 (2.8) BS15 CLA ? GO:0009416 ... Q41038 26076232
    30 4y28:3 (2.8) BS01 CLA ? GO:0009416 ... Q32904 26076232
    31 4y28:3 (2.8) BS02 CLA ? GO:0009416 ... Q32904 26076232
    32 4y28:3 (2.8) BS03 CLA ? GO:0009416 ... Q32904 26076232
    33 4y28:3 (2.8) BS04 CLA ? GO:0009416 ... Q32904 26076232
    34 4y28:3 (2.8) BS05 CLA ? GO:0009416 ... Q32904 26076232
    35 4y28:3 (2.8) BS06 CLA ? GO:0009416 ... Q32904 26076232
    36 4y28:3 (2.8) BS07 CLA ? GO:0009416 ... Q32904 26076232
    37 4y28:3 (2.8) BS08 CLA ? GO:0009416 ... Q32904 26076232
    38 4y28:3 (2.8) BS09 CLA ? GO:0009416 ... Q32904 26076232
    39 4y28:3 (2.8) BS10 CLA ? GO:0009416 ... Q32904 26076232
    40 4y28:3 (2.8) BS11 CLA ? GO:0009416 ... Q32904 26076232
    41 4y28:3 (2.8) BS12 CLA ? GO:0009416 ... Q32904 26076232
    42 4y28:3 (2.8) BS13 CHL ? GO:0009416 ... Q32904 26076232
    43 4y28:3 (2.8) BS14 CLA ? GO:0009416 ... Q32904 26076232
    44 4y28:3 (2.8) BS15 CLA ? GO:0009416 ... Q32904 26076232
    45 4y28:3 (2.8) BS16 CLA ? GO:0009416 ... Q32904 26076232
    46 4y28:3 (2.8) BS17 CLA ? GO:0009416 ... Q32904 26076232
    47 4y28:4 (2.8) BS01 CLA ? GO:0009416 ... Q9SQL2 26076232
    48 4y28:4 (2.8) BS02 CLA ? GO:0009416 ... Q9SQL2 26076232
    49 4y28:4 (2.8) BS03 CLA ? GO:0009416 ... Q9SQL2 26076232
    50 4y28:4 (2.8) BS04 CLA ? GO:0009416 ... Q9SQL2 26076232
    51 4y28:4 (2.8) BS05 CLA ? GO:0009416 ... Q9SQL2 26076232
    52 4y28:4 (2.8) BS06 CLA ? GO:0009416 ... Q9SQL2 26076232
    53 4y28:4 (2.8) BS07 CLA ? GO:0009416 ... Q9SQL2 26076232
    54 4y28:4 (2.8) BS08 CLA ? GO:0009416 ... Q9SQL2 26076232
    55 4y28:4 (2.8) BS09 CLA ? GO:0009416 ... Q9SQL2 26076232
    56 4y28:4 (2.8) BS10 CHL ? GO:0009416 ... Q9SQL2 26076232
    57 4y28:4 (2.8) BS11 CHL ? GO:0009416 ... Q9SQL2 26076232
    58 4y28:4 (2.8) BS12 CLA ? GO:0009416 ... Q9SQL2 26076232
    59 4y28:4 (2.8) BS13 CHL ? GO:0009416 ... Q9SQL2 26076232
    60 4y28:4 (2.8) BS14 CLA ? GO:0009416 ... Q9SQL2 26076232
    61 4y28:4 (2.8) BS15 CLA ? GO:0009416 ... Q9SQL2 26076232
    62 4y28:4 (2.8) BS16 CHL ? GO:0009416 ... Q9SQL2 26076232
    63 4y28:A (2.8) BS01 CL0 1.97.1.12 GO:0000287 ... P05310 26076232
    64 4y28:A (2.8) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    65 4y28:A (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    66 4y28:A (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    67 4y28:A (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... P05310 26076232
    68 4y28:A (2.8) BS06 PQN 1.97.1.12 GO:0000287 ... P05310 26076232
    69 4y28:A (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    70 4y28:A (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    71 4y28:A (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    72 4y28:A (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    73 4y28:A (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    74 4y28:A (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    75 4y28:A (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    76 4y28:A (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    77 4y28:A (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    78 4y28:A (2.8) BS16 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    79 4y28:A (2.8) BS17 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    80 4y28:A (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    81 4y28:A (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    82 4y28:A (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    83 4y28:A (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    84 4y28:A (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    85 4y28:A (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    86 4y28:A (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    87 4y28:A (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    88 4y28:A (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    89 4y28:A (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    90 4y28:A (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    91 4y28:A (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    92 4y28:A (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    93 4y28:A (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    94 4y28:A (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    95 4y28:A (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    96 4y28:A (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    97 4y28:A (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    98 4y28:A (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    99 4y28:A (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    100 4y28:A (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    101 4y28:A (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    102 4y28:A (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    103 4y28:A (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    104 4y28:A (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    105 4y28:A (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    106 4y28:A (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    107 4y28:A (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    108 4y28:A (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    109 4y28:A (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    110 4y28:A (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    111 4y28:A (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    112 4y28:A (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    113 4y28:A (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    114 4y28:A (2.8) BS52 CLA 1.97.1.12 GO:0000287 ... P05310 26076232
    115 4y28:B (2.8) BS01 peptide 1.97.1.12 GO:0000287 ... P05311 26076232
    116 4y28:B (2.8) BS02 CL0 1.97.1.12 GO:0000287 ... P05311 26076232
    117 4y28:B (2.8) BS03 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    118 4y28:B (2.8) BS04 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    119 4y28:B (2.8) BS05 SF4 1.97.1.12 GO:0000287 ... P05311 26076232
    120 4y28:B (2.8) BS06 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    121 4y28:B (2.8) BS07 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    122 4y28:B (2.8) BS08 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    123 4y28:B (2.8) BS09 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    124 4y28:B (2.8) BS10 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    125 4y28:B (2.8) BS11 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    126 4y28:B (2.8) BS12 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    127 4y28:B (2.8) BS13 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    128 4y28:B (2.8) BS14 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    129 4y28:B (2.8) BS15 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    130 4y28:B (2.8) BS16 PQN 1.97.1.12 GO:0000287 ... P05311 26076232
    131 4y28:B (2.8) BS17 CA 1.97.1.12 GO:0000287 ... P05311 26076232
    132 4y28:B (2.8) BS18 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    133 4y28:B (2.8) BS19 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    134 4y28:B (2.8) BS20 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    135 4y28:B (2.8) BS21 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    136 4y28:B (2.8) BS22 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    137 4y28:B (2.8) BS23 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    138 4y28:B (2.8) BS24 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    139 4y28:B (2.8) BS25 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    140 4y28:B (2.8) BS26 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    141 4y28:B (2.8) BS27 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    142 4y28:B (2.8) BS28 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    143 4y28:B (2.8) BS29 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    144 4y28:B (2.8) BS30 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    145 4y28:B (2.8) BS31 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    146 4y28:B (2.8) BS32 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    147 4y28:B (2.8) BS33 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    148 4y28:B (2.8) BS34 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    149 4y28:B (2.8) BS35 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    150 4y28:B (2.8) BS36 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    151 4y28:B (2.8) BS37 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    152 4y28:B (2.8) BS38 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    153 4y28:B (2.8) BS39 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    154 4y28:B (2.8) BS40 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    155 4y28:B (2.8) BS41 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    156 4y28:B (2.8) BS42 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    157 4y28:B (2.8) BS43 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    158 4y28:B (2.8) BS44 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    159 4y28:B (2.8) BS45 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    160 4y28:B (2.8) BS46 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    161 4y28:B (2.8) BS47 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    162 4y28:B (2.8) BS48 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    163 4y28:B (2.8) BS49 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    164 4y28:B (2.8) BS50 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    165 4y28:B (2.8) BS51 CLA 1.97.1.12 GO:0000287 ... P05311 26076232
    166 4y28:C (2.8) BS01 SF4 1.97.1.12 GO:0009055 ... P10793 26076232
    167 4y28:C (2.8) BS02 SF4 1.97.1.12 GO:0009055 ... P10793 26076232
    168 4y28:F (2.8) BS01 CLA ? GO:0009507 ... A0A0M3KL12 26076232
    169 4y28:F (2.8) BS02 CLA ? GO:0009507 ... A0A0M3KL12 26076232
    170 4y28:F (2.8) BS03 CLA ? GO:0009507 ... A0A0M3KL12 26076232
    171 4y28:F (2.8) BS04 CLA ? GO:0009507 ... A0A0M3KL12 26076232
    172 4y28:F (2.8) BS05 CLA ? GO:0009507 ... A0A0M3KL12 26076232
    173 4y28:G (2.8) BS01 CLA ? GO:0009507 ... A0A0M3KL13 26076232
    174 4y28:G (2.8) BS02 CLA ? GO:0009507 ... A0A0M3KL13 26076232
    175 4y28:G (2.8) BS03 CLA ? GO:0009507 ... A0A0M3KL13 26076232
    176 4y28:G (2.8) BS04 CLA ? GO:0009507 ... A0A0M3KL13 26076232
    177 4y28:G (2.8) BS05 CLA ? GO:0009507 ... A0A0M3KL13 26076232
    178 4y28:H (2.8) BS01 CLA ? GO:0009507 ... A0A0M3KL10 26076232
    179 4y28:H (2.8) BS02 CLA ? GO:0009507 ... A0A0M3KL10 26076232
    180 4y28:J (2.8) BS01 CLA ? GO:0009507 ... D5MAL3 26076232
    181 4y28:J (2.8) BS02 CLA ? GO:0009507 ... D5MAL3 26076232
    182 4y28:J (2.8) BS03 CLA ? GO:0009507 ... D5MAL3 26076232
    183 4y28:J (2.8) BS04 CLA ? GO:0009507 ... D5MAL3 26076232
    184 4y28:J (2.8) BS05 CLA ? GO:0009507 ... D5MAL3 26076232
    185 4y28:K (2.8) BS01 CLA ? GO:0009507 ... A0A0M3KL11 26076232
    186 4y28:K (2.8) BS02 CLA ? GO:0009507 ... A0A0M3KL11 26076232
    187 4y28:K (2.8) BS03 CLA ? GO:0009507 ... A0A0M3KL11 26076232
    188 4y28:L (2.8) BS01 peptide ? GO:0009522 ... E1C9L1 26076232
    189 4y28:L (2.8) BS02 CLA ? GO:0009522 ... E1C9L1 26076232
    190 4y28:L (2.8) BS03 CLA ? GO:0009522 ... E1C9L1 26076232
    191 4y28:L (2.8) BS04 CLA ? GO:0009522 ... E1C9L1 26076232
    192 4y28:L (2.8) BS05 CLA ? GO:0009522 ... E1C9L1 26076232
    193 4y28:L (2.8) BS06 CLA ? GO:0009522 ... E1C9L1 26076232
    194 4y28:L (2.8) BS07 CLA ? GO:0009522 ... E1C9L1 26076232
    195 4y28:L (2.8) BS08 CLA ? GO:0009522 ... E1C9L1 26076232
    196 4y28:L (2.8) BS09 CLA ? GO:0009522 ... E1C9L1 26076232
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218