COFACTOR uses four template libraries, which represent the searched structural and functional space. These libraries are publicly available for download from the links provided below:

Library Name Description Download links
Structure Representative PDB structure library used for identifying structural analogs Download
Enzyme (Global+Local) Representative library of enzyme structures. Download
Gene Ontology Representative PDB structures associated with GO terms. Download
Binding Site Representative PDB structures with known binding site Download

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References:
Ambrish Roy, Jianyi Yang, and Yang Zhang. COFACTOR: An accurate comparative algorithm for structure-based protein function annotation. 2012 (Submitted).

 


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