GPCR-I-TASSER model for Q9NRB8
(Q9NRB8_HUMAN G-protein coupled receptor EDG-7 OS=Homo sapiens PE=2 SV=1)


Click to download model1.pdb

GPCR Sequence:

    >tr|Q9NRB8|Q9NRB8_HUMAN G-protein coupled receptor EDG-7 OS=Homo sapiens PE=2 SV=1
    MNECHYDKHMDFFYNRSNTDTVDDWTGTKLVIVLCVGTFFCLFIFFSNSLVIAAVIKNRK
    FHFPFYYLLANLAAADFFAGIAYVFLMFNTGPVSKTLTVNRWFLRQGLLDSSLTASLTNL
    LVIAVERHMSIMRMRVHSNLTKKRVTLLILLVWAIAIFMGAVPTLGWNCLCNISACSSLA
    PIYSRSYLVFWTVSNLMAFLIMVVVYLRIYVYVKRKTNVLSPHTSGSISRRRTPMKLMKT
    VMTVLGAFVVCWTPGLVVLLLDGLNCTQCGVQHVKRWFLLLALLNSVMNPIIYSYKDEDM
    YSTMKKMICCFSQERNLDRRPSRLPSTILSRSDTGSQYKEDSSSQGTVCNKNSS

Estimation of the GPCR-I-TASSER model for Q9NRB8

    C-score = 0.330
    TM-score = 0.760 (estimated)
    RMSD = 5.8 A (estimated)

    Here, C-score is a confidence score of the GPCR-I-TASSER predictions which is typically in [-5,2]. TM-score and RMSD measure how close the model is to the native structure and both are estimated based on the C-score. TM-score is in [0,1] with a value >0.5 implying the model of correct topology. The TM-score and RMSD estimations are made only for the first model because absolute values of TM-score and RMSD for the lower-rank models do not strongly correlate with the C-score. The models are ranked based on the structure density of GPCR-I-TASSER simulations.

The top ten threading templates used by GPCR-I-TASSER

Reference:

    J Zhang, J Yang, R Jang, Y Zhang, Novel hybrid approach to G protein-coupled receptor structure modeling and case study on human genome, submitted, 2014.


Back to the GPCR-I-TASSER model page

 


yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue Ann Arbor, MI 48109-2218