LOMETS (Local Meta-Threading-Server) is an on-line web service
for protein structure prediction.
It generates 3D models by collecting high-scoring target-to-template alignments
from 10 locally-installed threading programs
(FUGUE, HHsearch, MUSTER, PPA, PROSPECT2, SAM-T02, SPARKS, SP3, FFAS and PRC).
A detailed description of the server can been seen in
the Readme file.
Questions about the LOMETS server can be posted at the
Service System Discussion Board.
The output of LOMETS includes
(see an illustrative example):
- The best 10 threading models selected from 160 models by the confidence score
- Top 10 target-template alignments of individual threading servers
- Prediction of spatial C-alpha and side-chain contact and distance map
- Full-length models built by MODELLER guided by consensus restraints
S. Wu, Y. Zhang.
LOMETS: A local meta-threading-server for protein structure prediction.
Nucleic Acids Research 2007; 35: 3375-3382
(download the PDF file).
to download the benchmark set of 620 non-redundant proteins used by