LOMETS (Local Meta-Threading-Server) is an on-line web service for protein structure prediction. It generates 3D models by collecting high-scoring target-to-template alignments from 10 locally-installed threading programs (FUGUE, HHsearch, MUSTER, PPA, PROSPECT2, SAM-T02, SPARKS, SP3, FFAS and PRC). A detailed description of the server can been seen in the Readme file. Questions about the LOMETS server can be posted at the Service System Discussion Board.

FAQ

The output of LOMETS includes (see an illustrative example):

  • The best 10 threading models selected from 160 models by the confidence score
  • Top 10 target-template alignments of individual threading servers
  • Prediction of spatial C-alpha and side-chain contact and distance map
  • Full-length models built by MODELLER guided by consensus restraints

Download LOMETS Package

Cut and paste your sequence here (in FASTA format):

Or upload the sequence from your local computer:

Email: (mandatory, where results will be sent to)

ID: (optional, your given name of the protein)


Reference:
S. Wu, Y. Zhang. LOMETS: A local meta-threading-server for protein structure prediction. Nucleic Acids Research 2007; 35: 3375-3382 (download the PDF file).

Click here to download the benchmark set of 620 non-redundant proteins used by LOMETS.

 


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