QUARK Ab Initio Results for YEDD_ECOLI


  Submitted Primary Sequence

>Length 137
MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP
CHHHHHHHHHHHHHCCCCTTTTHHHHCCTTTTTTCCEEETTTTTTTTTTHHHEEEEEECTTTTECCHHHHHHHHHTTTTTEETTTTEEEEEEEEEEEEEEETTTTETTTTTEEEECCCCCHHHHHHHHHCCCCTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP
44210100010001001303212201302022202010213133411113300000000332321102101200123120011232001011211002011322101111010121422222002003512233324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.417 to 1p4pA
SCOP code=b.76.1.1
TM-score=0.409 to 1wdyA
SCOP code=d.211.1.1
TM-score=0.411 to 2p1xA
SCOP code=d.82.2.1
TM-score=0.417 to 2ftxB
SCOP code=d.300.1.2
TM-score=0.434 to 2ga5A
SCOP code=d.82.2.1
Estimated TM-score of Model 1: 0.2748 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3077 ±0.0778