QUARK Ab Initio Results for YFDK_ECOLI

Submitted Primary Sequence

>Length 146
MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
CEEEETTTTCEEECHHHHHHHHHCCCCTTTTEECCHHHHHHHTTTTTTTTEEEETTTTCEETTTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHCTTTTTCCCCTTTTTTTTCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSGLPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAAIGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR
32010013210000220120024121013200102230012012222412110013311101032221233211100222122102102200201210040222413231111121012002003201122012031122222436
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.536 to 2hguK SCOP code=d.99.1.1	TM-score=0.519 to 1kd9A SCOP code=h.1.3.1	TM-score=0.531 to 1kd9A SCOP code=h.1.3.1	TM-score=0.518 to 1nh2D SCOP code=a.32.1.1	TM-score=0.490 to 7pckA SCOP code=d.3.1.1

Estimated TM-score of Model 1: 0.3708 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4104 ±0.0778