QUARK Ab Initio Results for YMGD_ECOLI


  Submitted Primary Sequence

>Length 109
MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK
CHHHHHHHHHHHHHHHHHHHHCCTTTTCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHTTTTCCCCCCCCCHHHHHHHHHHHHCTTTTEEEHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDTMRAIGKK
5320011001000001100321303320111000001202211322211002001111202121231313323412230022012003411200001001110222255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.554 to 1lq7A
SCOP code=k.9.1.1
TM-score=0.479 to 1x9zA
SCOP code=d.292.1.1
TM-score=0.528 to 1gntA
SCOP code=e.26.1.1
TM-score=0.533 to 1sxjB
SCOP code=a.80.1.1
TM-score=0.510 to 1taeA
SCOP code=d.142.2.2
Estimated TM-score of Model 1: 0.3506 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3888 ±0.0778