QUARK Ab Initio Results for YBER_ECOLI

Submitted Primary Sequence

>Length 235
MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSSWGIDDRDDLLRTIHRMIDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFVASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQYFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQPLAYYSACPETLKDMSDL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSSWGIDDRDDLLRTIHRMIDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFVASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQYFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQPLAYYSACPETLKDMSDL
CCHHHHHHHHHHHHHHHHHTTTTTTTTTTHHHTTTTTTTCHHHTTTTCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTTTHTTTTTTTTHHHHHHHHHCCCCHHHHHHHHHHHCTTTTCCEECTTTTCTTTTTTTTTTHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSSWGIDDRDDLLRTIHRMIDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFVASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQYFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQPLAYYSACPETLKDMSDL
5332022111000000101122111111002112122211022011031131003002200320101201000221131222113210331233022002000100310131001000000000000000202101131011000200220231021022001000000001212333323102200233322320120012011133010020113111221202321331244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.456 to 1s5kA SCOP code=d.108.1.1	TM-score=0.457 to 1j5wB SCOP code=d.104.1.1	TM-score=0.440 to 2r2vA SCOP code=h.1.3.1	TM-score=0.470 to 1z3yA SCOP code=a.118.1.22	TM-score=0.415 to 1vb5B SCOP code=c.124.1.5

Estimated TM-score of Model 1: 0.3511 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3894 ±0.0778