QUARK Ab Initio Results for YBFD_ECOLI


  Submitted Primary Sequence

>Length 253
MELKKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCICPAKFHESFINWMLDYHSSDDKDVIAIDGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGKIIKTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPKHDSYAISEKSHGREETRLHIVCDVPDELIDFTFE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MELKKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCICPAKFHESFINWMLDYHSSDDKDVIAIDGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGKIIKTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPKHDSYAISEKSHGREETRLHIVCDVPDELIDFTFE
CCHHHHHHHHHCCCCTTTTTTCCTTTTHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTTTTCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCTTTTCEEEEETTTTTTTTTTTTTTTTTTTEEEETTTTTCEEEEEETTTTTCHHHHHHHHHHHHTTTTTEEEETTTTTTHHHHHHHHHCCCCEEEETTTTTHHHHHHHHHHCCHHHCCCCCCCEEETTTTTTTCEEEEEEEEECCCHHHHCTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MELKKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCICPAKFHESFINWMLDYHSSDDKDVIAIDGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLNMLDIKGKIIKTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPKHDSYAISEKSHGREETRLHIVCDVPDELIDFTFE
5513301210220312332231202001000000000002031031011002101200131021321012110001001201221022001100211111232100001031233123324431200000000122100000021344221110002002212031100101020023200220132201000002212230030013202233233332210121343311211110000212321231224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.423 to 1nh2D
SCOP code=a.32.1.1
TM-score=0.395 to 2b30A
SCOP code=c.108.1.10
TM-score=0.419 to 1juoA
SCOP code=a.39.1.8
TM-score=0.408 to 1of9A
SCOP code=a.64.1.4
TM-score=0.392 to 2i7pB
SCOP code=c.55.1.14
Estimated TM-score of Model 1: 0.3383 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3756 ±0.0778