QUARK Ab Initio Results for YFAA_ECOLI

Submitted Primary Sequence

>Length 562
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
CCCCCCTTTTEEETTTTTTHHHHHHHHHHHHHTTTTTTCCCCCTTTTTTTTEETTTTTTTEECHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHCCCHHHHHHHHHHCCTTTTEEEETTTTTTTTEEEEETTTTHHHHHHHHHHHCCCHHHHHCCTTTTTTETTTTTEEEEETTTTTCEEEETTTTTTEEETTTTTEEETTTTTCCHHHHHHHHHTTTTTCHHHHCCCTTTTTTTCTTTTEEEEEHHHHHHHHHHHTTTTHEEEETTTTTTTHHHHCCTTTTCCCCTTTTTTCHHHHCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHTTTTCTTTTETTTTTTTTTTCEEEETTTTHHHHHHHHHHHHHHHCTTTTTTTCCCTTTTEECTTTTEEEEEEECCCCCCCCCTTTTTTTTHHCTTTTCCCEEETTTTEEEETTTTHHHHHHHHHHHCTTTTCCCCCTTTTEEEETTTTTHHHHHHHHHHHHHCTTTTHHHHHHHHHHHCCHHHHHHCCCCCEEEETTTTTTTTCCCEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

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Predicted Solvent Accessibility

>0-buried to 9-exposed
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
5533432421101021010000010000100211322233221210222311020221311011310230132003010012000210020122123200121001200122202122200210022101000011442411100000211000200210011002321123132221211242010000212121000000231100001111000343332230110012002233213211213332233232211000002000100120010110010111331010000123222223120211100100110010000011112102300120021134022112000000003302020000002031112112100200221022332313322121222432212001120223213124231222231113210200001221000001222001200210232211113201330000000113100300122014202331220012002210011022014212000102322221121100020123
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

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Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.385 to 1ug3A SCOP code=a.118.1.14	TM-score=0.360 to 1tuaA SCOP code=d.51.1.1	TM-score=0.385 to 2r2vA SCOP code=h.1.3.1	TM-score=0.362 to 1bi2A SCOP code=a.4.5.24	TM-score=0.370 to 1ya0B SCOP code=a.118.8.1

Estimated TM-score of Model 1: 0.2937 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3280 ±0.0778