QUARK Ab Initio Results for YNJI_ECOLI

Submitted Primary Sequence

>Length 346
MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLIAPYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLIAPYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS
CCCCTTTTTTTTTTTTTTCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHTTTTTTTTTCEECCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCTTTTEECCCCCCHHHCTTTTTTTTTTTTHHEECCCCCCTTTTHHHHHHHHTTTTCCHHHHHHHHHHHHHCCTTTTTHHHHHCCCHHHHHHHHHHHTTTTHHHHHHHHHCTTTTTCHHHHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTTTHHHTTTTTTCCTTTTTCTTTTTTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLIAPYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS
5542223323123302110130001102200432200000201010000000000000012211233000110010000000000002120313311221131321331223101002010212001521111021122313213211100001112131123213102421102103100100220032310111120223322310111013112122310120122122421020000000000000000001011031210020011002202410310220020000000111110112210221031023113301320233030102202111122435
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.433 to 4vhbA SCOP code=a.1.1.2	TM-score=0.451 to 1nvpD SCOP code=a.32.1.1	TM-score=0.480 to 1et1A SCOP code=j.15.1.1	TM-score=0.455 to 3cf5V SCOP code=a.2.2.1	TM-score=0.461 to 2r2vA SCOP code=h.1.3.1

Estimated TM-score of Model 1: 0.3628 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4018 ±0.0778