Template-based Modeling Results for CUSF_ECOLI

Submitted Primary Sequence

>Length 110
MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
CCCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCEEEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
53301100110000210120213213332223132210102010210144222000201202203111000102022312023033222010201222420101112235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
1	MUSTER	1zeqX	0.988	0.764	3.202	threading_1	--------------------------METMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
2	SPARKS	1zeqx	0.988	0.764	3.187	threading_2	--------------------------METMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
3	PROSPECT2	1zeqX	1.000	0.764	1.742	threading_3	M--------------------------ETMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
4	PPA-I	1zeqX	0.988	0.764	5.024	threading_4	--------------------------METMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
5	HHPRED-l	2qcp_X	0.987	0.718	5.201	threading_5	------------------------------MEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVS-
6	HHPRED-g	2qcp_X	0.988	0.727	4.713	threading_6	------------------------------MEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
7	SP3	1zeqx	0.988	0.764	3.108	threading_7	--------------------------METMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
8	SAM-T99	1zeqX	1.000	0.745	3.700	threading_8	----------------------------TMSEAQPQVISATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ
9	MUSTER	2l55A	0.270	0.673	2.411	threading_9	----------------------------------GPEHRAVGRIQSIG--ERSLIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDHGMATLVTVAPQV
10	SPARKS	2l55a	0.270	0.673	2.447	threading_10	----------------------------------GPEHRAVGRIQSIGER--SLIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLDHGMATLVTVAPQV

Predicted Tertiary Structure


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TM-score=0.536 to 1l0wA TM-score=0.952 to native SCOP code=b.40.4.1	TM-score=0.536 to 1l0wA TM-score=0.952 to native SCOP code=b.40.4.1	TM-score=0.536 to 1l0wA TM-score=0.952 to native SCOP code=b.40.4.1	TM-score=0.533 to 2eifA TM-score=0.953 to native SCOP code=b.34.5.2	TM-score=0.536 to 1l0wA TM-score=0.952 to native SCOP code=b.40.4.1

Experimental Structure

Download 1zeqX

SCOP code=b.34.5.2