Template-based Modeling Results for SMPA_ECOLI


  Submitted Primary Sequence

>Length 113
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
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  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCCEEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
44111000000000000000112341113121220110223102302322213100200111212321121000000102324432211000000242110110333322345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
1MUSTER2kxxA0.9590.8583.788threading_1----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
2SPARKS2kxxa0.9590.8583.874threading_2----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
3PROSPECT22kxxA0.9590.8581.941threading_3G----------------SHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
4PPA-I2kxxA0.9590.8585.208threading_4----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
5HHPRED-l2km7_A0.9890.8235.926threading_5-------------------SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSG-
6HHPRED-g2pxg_A0.2930.8146.129threading_6----------------MAGSGI----IYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVDRLRTEIKNFTVFFENE-QVVRWEGDYFPSQD
7SP32kxxa0.9590.8583.695threading_7----------------GSHMSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
8SAM-T992kxxA1.0000.8233.963threading_8--------------------STLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN
9MUSTER2pxgA0.2930.8142.366threading_9----------------MAGSGI----IYKQPIYQGNLIKQNAVEQLQVGQSKQQVSALLGTPSIPDPFHAQRWDYTSTQRVRLARTEIKNFTVFFE-NEQVVRWEGDYFPSQD
10SPARKS2km7a0.9890.8323.694threading_10-------------------SSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGN

  Predicted Tertiary Structure

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TM-score=0.435 to 1f02I
TM-score=0.466 to native
SCOP code=b.1.14.1
TM-score=0.435 to 1f02I
TM-score=0.466 to native
SCOP code=b.1.14.1
TM-score=0.435 to 1f02I
TM-score=0.466 to native
SCOP code=b.1.14.1
TM-score=0.431 to 1f02I
TM-score=0.471 to native
SCOP code=b.1.14.1
TM-score=0.435 to 1f02I
TM-score=0.466 to native
SCOP code=b.1.14.1

  Experimental Structure

Download 2yh9B
SCOP code=g.59.1.1