Template-based Modeling Results for YBJM_ECOLI


  Submitted Primary Sequence

>Length 125
MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
55443310000000000000000111213101321111100000000000000001322100200000000000000001001022210020000000000000000000000011032324334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLFFILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFWCALGALCFLFISSLFKPQHRKNQ
1MUSTER2ksfA0.1680.8081.204threading_1MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLV--------MLYLLGVVVVALFYGRW--------SVVATVINVVSFDLFFIAPRTL-SDVQYLLTFAVMLTVGLVIGNLTAGV-------YQ
2SPARKS2ksfa0.1590.8561.300threading_2MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLV--------MLYLLGVVVVALFYGRW-------PSVVATVINVVSFDLFFIAPRGTLA--VSDVQYLLTFAVMLTVGLVIGNLTAGVRYQA-
3PPA-I2ksfA0.1520.8401.420threading_3MVQIQGSVVAAALSAVITLIAMQWLMAFDAANLV--------MLYLLGVVVVALFYGRW-------PSVVATVINVVSFDLFFIAPRGTLADVQYLLTFAVMLTVGLVIGNLTAGVRYQA-----
4MUSTER1c17M0.1780.9440.863threading_4-HGKSKLIAPLALTIFVWVFLMNLMDHVLGALRVVPSADMALGVFILILFYSILLSKPVSLGLRLFGNMYAGELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLS------
5SPARKS3lr2a0.1570.9200.919threading_5--HTTPWENFMNSFMQGL--------SSMPGFTASQLDDMSTIAQSMVQSIQSLAAQGRNKLQALNMAFASSMAEIAASEEGGGSLSTKTSSIASAMSNAFLQTTGVVNQPFINEITQLVSMFAQ
6PROSPECT22iu5A0.0881.0000.848threading_6MEKSIITQKIIAKAFLLSWIFENDFAELINDNSDYYGWQNELLLLLRQIFYQKIFVIDKNFEHFFLIQWENLLDKVIFDQEKKSDYHWSDLEKSFICRYNAAAICAITRESIIVNLLLAQIKIFE
7PPA-I1pw4A20.1060.9840.875threading_7LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM--NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTA
8HHPRED-l3o0r_B0.1300.9840.881threading_8RGRKTAMV-LMTGLIGLALLFLFSFYNENLTRDKVVHLWVEVWELIMGAILAFVLVKITGVDREVIEKWLMALISGIGHHYFWIGVPGYWLWLGSVFSALEPLPFFAMVLFAFNTINRRRRDYP-
9HHPRED-g2ksf_A0.1710.8400.927threading_9MVQIQGSVVAAALSAVITLIAMQWLMAF-------D-AANLVMLYLLGVVVVALFYGRW-------PSVVATVINVVSFDLFFIAPRTLASDVQYLLTFAVMLTVG----LVIGNLTAGVRYQA-
10SP32ksfa0.1630.8320.760threading_10MVQIQGSVVAAALSAVITLIAMQWLMAF-------DAANL-VMLYLLGVVVVALFYGRW----P---SVVATVINVVSFDLFFIAPRTLVSDVQYLLTFAVMLTVGLVIGNLTAGV------RYQ

  Predicted Tertiary Structure

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TM-score=0.631 to 1dowA
SCOP code=a.24.9.1
TM-score=0.636 to 1dowA
SCOP code=a.24.9.1
TM-score=0.618 to 2hujA
SCOP code=a.24.26.1
TM-score=0.712 to 1c17M
SCOP code=f.18.1.1
TM-score=0.648 to 2j0oA
SCOP code=a.250.1.1