Template-based Modeling Results for YCJD_ECOLI

Submitted Primary Sequence

>Length 117
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENILQELNRRSPSP
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENILQELNRRSPSP
CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEECHHHCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCHHHHHHHHHHHHHCCCCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENILQELNRRSPSP
433312220320252212112100210222312302011212111000000012010001012232322111112021103321010010002201210320022013103432334
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVGSYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETVLENILQELNRRSPSP
1	MUSTER	3hrlA	0.473	0.778	2.457	threading_1	---------------ASEAEAKLWQHLRAGRLNGYKFRRQQP-GNYIVDF-CVTPKLIVEADGVY-------DHARTVYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEK--
2	SPARKS	3hrla	0.473	0.778	3.136	threading_2	---------------ASEAEAKLWQHLRAGRLNGYKFRRQQP-GNYIVDF-CVTPKLIVEADGVY-------DHARTVYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEK--
3	PROSPECT2	3hrlA	0.473	0.778	1.441	threading_3	---------------ASEAEAKLWQHLRAGRLNGYKFRRQQP-GNYIVDF-CVTPKLIVEADGVY-------DHARTVYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELE--K
4	PPA-I	3hrlA	0.473	0.778	4.122	threading_4	---------------ASEAEAKLWQHLRAGRLNGYKFRRQQP-GNYIVDF-CVTPKLIVEADGVY-------DHARTVYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEK--
5	HHPRED-l	1cw0_A	0.248	0.966	5.259	threading_5	DKATRSKNMRAIATRDTAIEKRLASLLTGQ---GLAFRVQDASLPGRPDFVVDEYRCVIFTHGCFWHHNVERDRRDISRLQELGWRVLIVWECALRGREEALTERLEEWICGEGAS-
6	HHPRED-g	3r3p_A	0.234	0.803	4.383	threading_6	----------------TTPERRVKEILDEM---DIVYFTHHVVEGWNVAFY-LGKKLAIEVNGVWASKNVNKDKRKLSELHSKGYRVLTIEDDEL-NDIDKVKQQIQKFWVTHIS--
7	SP3	3hrla	0.473	0.778	3.277	threading_7	---------------ASEAEAKLWQHLRAGRLNGYKFRRQQP-GNYIVDF-CVTPKLIVEADGVY-------DHARTVYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQELEK--
8	SAM-T99	3hrlA	0.494	0.744	3.505	threading_8	---------------ASEAEAKLWQHLRAGRLNGYKFRRQQP-GNYIVDFCV---KLIVEADG-------VYDHARTVYLNSLGFTVLRFWNHEILQQTNDVLAEILRVLQEL----
9	MUSTER	1cw0A	0.237	0.974	1.366	threading_9	VHATRSKNMRAIATRDTAIEKRLASLLTGQ---GLAFRVQDASLPGRPDFVVDEYRCVIFTHGHCYLKNVERDRRDISRLQELGWRVLIVWECALRGREKLTDEALTERLEECGEGA
10	SPARKS	3r3pa	0.223	0.803	1.463	threading_10	----------------TTPERRVKEILDEM---DIVYFTHHVVEGWNVAFY-LGKKLAIEVNGASKQKNVNKDKRKLSELHSKGYRVLTIE-DDELNDIDKVKQQIQKFWVTHIS--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.606 to 1cw0A SCOP code=c.52.1.15	TM-score=0.625 to 1cw0A SCOP code=c.52.1.15	TM-score=0.606 to 1cw0A SCOP code=c.52.1.15	TM-score=0.599 to 1cw0A SCOP code=c.52.1.15	TM-score=0.606 to 1cw0A SCOP code=c.52.1.15