Template-based Modeling Results for YFDM_ECOLI

Submitted Primary Sequence

>Length 91
MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW
CCCHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHCCEEECCCCCCCCHHHHHHCCHHHHHHHCCHHHHHHCCCCEEEECCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW
5523102213212333233232122213003100100021002000100011310202210023111121201211221300000111246
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--------10--------20--------30--------40--------50--------60--------70--------80--------90

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPFVLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYPW
1	PPA-I	2r8jA3	0.090	0.857	1.045	threading_1	LGGVLGKELIDVLDPHENSIKHIRETWPNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLS-------------
2	HHPRED-g	1wy7_A	0.205	0.967	1.114	threading_2	--RKKELAIALSKLKGFKNPKVWLEQYRTPGNAASELAYSLGKVVADLGAGTGVSYGALVICVEEFKGKFKVFSEFNSRVDIVI-NPPFGS
3	HHPRED-g	3lkd_A	0.160	0.890	1.113	threading_3	LGDAYEYLIGQFA-T---D---KAGEFYTPQPVAKL-TQIAFLTLYDAT-GSGSLLAKRYFGQEADTLDEDWPTQEPTNFDGVL-NPPYSA
4	HHPRED-g	2ih2_A	0.213	0.670	1.113	threading_4	--------------------------VETPPEVVDFMVSLAEGRVLEPACAHGPFLRERFVGVEADFLLWEPGE----AFDLILGNPPYGI
5	HHPRED-g	2okc_A	0.157	0.978	1.047	threading_5	-DGDKGAIYESILEKNGQDKKSGAGQYFTPRPLIQA-VDCINETVCDPACGTGGFLLTALHGVDNTPLVVTSLEKPSTLVDVILANPPFGT
6	MUSTER	1d8jA	0.211	0.835	0.771	threading_6	GSSGYKFGVLAKIVNYMKTRHQRGDTHPTLDEILDETQ------HLDI-----GLKQKQWLMTE--ALVNN--PKIEVIDGKYAFKPKYNV
7	SPARKS	2ef8a	0.169	0.846	0.904	threading_7	HDHRYVQLLTKLRKEASLSQSELAIFLGLSQSDISKIES--FERRLDALELFELEVVASRLGLPMDILLKDTYESISKS------------
8	PROSPECT2	3g7dA1	0.114	0.769	0.569	threading_8	GKVSAGSVLDLFLARRAHTRTSAAEAAGVPPADLEAALR-----------SPASETGLTVLRTLGRALGFDYRV----------LLPADDQ
9	PPA-I	1iufA1	0.130	0.758	0.888	threading_9	ITEHEKRALRHYFFQLQNRS--------GQQDLIEWFREKFGK---DISQPSVSQILSSKYSYLDNTVEKPWDVKRNRPP-----------
10	HHPRED-l	2okc_A	0.202	0.978	0.719	threading_10	IDKKVITIYESILEKNGQDKKSGAGQYFTPRPLIQA-VDCINPTVCDPACGTGGFLLTALHGVDNTPLVVDSLEKPSTLVDVILANPPFP-

Predicted Tertiary Structure


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TM-score=0.799 to 2r8jA SCOP code=d.240.1.1	TM-score=0.639 to 1wy7D SCOP code=c.66.1.32	TM-score=0.441 to 1nw3A SCOP code=c.66.1.31	TM-score=0.461 to 2ar0A SCOP code=c.66.1.45	TM-score=0.628 to 2okcB SCOP code=c.66.1.45