Template-based Modeling Results for YJDO_ECOLI

Submitted Primary Sequence

>Length 57
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
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--------10--------20--------30--------40--------50

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCHHHHHHHCC
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--------10--------20--------30--------40--------50

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
452121111110000100000110123432101000000011212110110101212
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--------10--------20--------30--------40--------50

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MALFSKILIFYVIGVNISFVIIWFISHEKTHIRLLSAFLVGITWPMSLPVALLFSLF
1	MUSTER	2axtZ	0.154	0.912	1.081	threading_1	MTILFQLALAALVILSFVMVIGVPVA-QDKQLIFLSGLWIA----LVLVVGVLNFFV
2	MUSTER	2kseA	0.164	0.965	1.009	threading_2	LSLRVRLTLIFLILASVTWLLSSFVAREDMALAIVAGQLI--PWLVALPIMLIIMMV
3	MUSTER	1zq1C2	0.148	0.947	0.975	threading_3	-ELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEELVSMGVK-P-SLAASILVVVL
4	SPARKS	2ksea	0.164	0.965	0.985	threading_4	LSLRVRLTLIFLILASVTWLLSSFVAREDMALAIVAGQLI--PWLVALPIMLIIMMV
5	PROSPECT2	3l9tA1	0.105	1.000	0.511	threading_5	SKQYARLEKDFSLKEEEQRALTDYKSNDGEYIKKLAFLAYQSDVYQVRYAVFLFGYF
6	PPA-I	1s5li	0.171	0.614	0.991	threading_6	-METLKITVYIVVTFFVLLFVFGFLSGDPARNKDLE---------------------
7	HHPRED-l	3ajf_A	0.255	0.825	0.879	threading_7	EH-FLQ-IRKPDDPENLSKSAIW-LSHKRDLYRLPLTCLVSTYS------EYFVEL-
8	HHPRED-g	3ixz_A	0.179	0.982	0.849	threading_8	IEHFVDIIAGLAILFGATFFIVAMCIGYTRAMVFFMAIVVAY-VPEGLLATVTVCLS
9	SP3	1h2sb	0.088	1.000	0.712	threading_9	VFIFVGALTVLFGAIAYGEVTAAAATGDAAAVQAAVSAILGLIILLGINLGLVAATL
10	SAM-T99	3pjzA2	0.281	1.000	0.621	threading_10	AFIFIQVLLFLVCFLLLLKHHSYTSPYDAFDQALFQTVSISTTWPLFLPVLLLFSSF

Predicted Tertiary Structure


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TM-score=0.678 to 1pd3A SCOP code=a.30.3.1	TM-score=0.358 to 1iojA SCOP code=j.39.1.1	TM-score=0.555 to 2db7A SCOP code=a.273.1.1	TM-score=0.907 to 1zq1C SCOP code=a.182.1.2	TM-score=0.636 to 1pd3A SCOP code=a.30.3.1