Template-based Modeling Results for AGAR_ECOLI


  Submitted Primary Sequence

>Length 269
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCEEECCCCCEECHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCHHHHHHHHHHHHHHCEEEEEECCCCCCCEEEEEEECHHHCCEEEECCCCCHHHHHHHHHCCCEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
54333232343221222013200220352220203200321111121022002102521100101100001322222222213212211121130002001310431110001000001100210352320000000010011014132010000102013322001032012003202000000001001132100122221020122002102200000121312220001001033010000132022300200451211001125
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE
1SPARKS2w48a0.1590.8621.244threading_1------------SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVT-------IAINYDYNENLWLEQQLKQKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARDSLDVALVGGSPAIRDGAFYGSEESDDLNARHV-AGDICSRFYDINGGLVDTNMSELSIEMAKLRQARYSIGIAGEEK--YSGILGALHGRYINCLVTN----RETAELLLK----------
2PROSPECT22w48A0.1270.9331.713threading_2SD-------------DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINY---DYNENLWLEQQLKQKFGLEEEQLSAMGQHGARLLEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNPLMQSQHFKTISSYWDLDVALVGIGSPAIRDGANWHAFYGSEESDDLNA--RHVAGDIGLVDTNMSEKTLSIEMAKARYSIMGEEKYSGILGALHGRYINCLVTNK
3SP32w48a0.1190.9371.005threading_3------------SDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGIVTAINY----DYNENLWLEQQLKQKFGLKEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAARLKAESHLADFPALLDNNGIMQQHFKTISSYWSLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARCSRFYGLVDTNMSEKTLSIEMAKLRQARYSIGGEEKYSGILGALHGRYINCLVTNR
4PPA-I3enwA0.1480.5761.411threading_4---------------------------------------------------------------------------------------TQDEMKKAAGWAALKYVEKGSIVGVGTGSTVNHFIDALGTMSEKGAVSSSVASTEKLEAL--------GIKIFDCNE------------VASLDIYVDGADEINADREMIKGGGAALTREKIVAAIADKFICIVDGTKAVDV-------LGTFPLPVEVIPMASYVARQLVKLGGDPCYREG
5SAM-T991i1gA10.2350.1901.314threading_5--------------IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGII------------------------------------------------------------------------------------------------------------------------------------EGYT------------------------------------------------------------------------
6HHPRED-l3rrl_B0.1560.6213.542threading_6--------------------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYPLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVFEFSNQVKEKTEAEFEVRL-
7SPARKS1vb5a0.1790.8101.015threading_7--------------LPERVLEILREMKREAKKGAEAFLTLAELDESLLEDAIMELREEYNLARF----IPVTNRRDILKSRALEFLRRMEEAKRELASIGAQLIDDGDVIITSFSSTVLEIIRTAKERKRFKVILEGLHLARELEFS-GIEFEVI---------------TDAQMGLFEASIAIVGADMITKDGYVVNKA-GTYLLALACHENAIPFYVAAETYKFHPTLLFDVTPWKYVRGIITELGIPRDI----------------
8HHPRED-g3rrl_B0.1700.6133.291threading_8--------------------------------------------------------------------------------------------REAIIKRAAKELKEG-YVNLGIGLPT-LVANEVS-G-NIVFQSENGLLGYPLEGSVDADLINAGKEVVPGASFFNSADSFA-IRGGHIDLAILGG-EVSQNGDLANW-IPKKLIK-DLVHGAKKVIVI-EHCNKGESKVKKECSLGVVHQLITDLAVSLDQVKEKTEAEFEVRL---
9MUSTER2w48B0.1270.8770.776threading_9-----------NSDDIRLIVKIAQLYYEQD-MTQAQIARELGIYRTTISRLLKRGREQGILKQKFG-AVVASSDGLL-----------EEEQLSAMGQHGALLVEPGDIIGFSWGRAVRSLVENLPQRRQVICVPHVNTLTYGAAAR-------LKAESHLDFPALLDLIRNGIMQS-SLDVALVGIGSPAIRDGANWHAFYGSEESDDLNARCSRFYDLVDTNMSEKTLSIEMAKLRQARYSIG-EEKYSGILGALHGRYINCLVTNR
10SP31ks2a10.2160.4981.115threading_10---------------------------------------------------------------------------------------TQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTGQIEGAVSSSDASTEKLKSL--------GIHVFD-------------LNEVSLGIYVDGADEINGH--QIKGGGAALTREKIIASVAEKFICIADASKQ-------------VDIL-ANRGAD-----------VALIGTPD

  Predicted Tertiary Structure

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TM-score=0.591 to 2gnpA
SCOP code=c.124.1.8
TM-score=0.645 to 2gnpA
SCOP code=c.124.1.8
TM-score=0.647 to 2gnpA
SCOP code=c.124.1.8
TM-score=0.610 to 1m0sA
SCOP code=c.124.1.4
TM-score=0.477 to 1i1gA
SCOP code=a.4.5.32