Template-based Modeling Results for SYN_ECOLI


  Submitted Primary Sequence

>Length 466
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
CCEEEHHHHHCCCCCCCCEEEEEEEEEEHHCCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCCCEEEEECHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEECCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCHHHEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
4321201211313222312000100010122232100000011010111000013322330121023022110010102022233434212020110100021333221312244222210131110101121100002001100200030025220010000000012132112002001222331333332423133301232000000010000000010220010010010232321210010010100000020220010022002100210032013003101330233001202311324122030220020024023313221321220223112100222131000002013303101132343120000000001100100110122232310131035221233101100101310001110000000000000010310010000121243033
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
1MUSTER2xgtA0.2950.9103.624threading_1---VKIRDL---VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQ-TYDALTVNTECTVEIYGAIKEVPN---GHELIADFWKIIGNAPP--GGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
2SPARKS2xgta0.2920.9107.329threading_2---VKIRDLVK---HRNERVCIKGWIHRMRRQGKSLMFFILRDGTG--FLQVLLMDKLCQT-YDALTVNTECTVEIYGAIKEVPN---GHELIADFWKIIGNAPP--GGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNVEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
3PROSPECT22xgtA0.2970.9105.872threading_3VK---IRDL---VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQT-YDALTVNTECTVEIYGAIKEVP---NGHELIADFWKIIG--NAPPGGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL--------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQRAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
4PPA-I2xgtA0.2880.9105.727threading_4------VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQ---TYDALTVNTECTVEIYGAIKEVP---NGHELIADFWKIIGNAPP--GGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
5HHPRED-l1wyd_A0.2950.9104.035threading_5MYRSFIADVT--PEYDGKEVIWAGWVHLLRD-LGGKKFIILRDKTGL--GQVVVDKNSS-AFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI--------------------YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTSKSE-PELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT-
6HHPRED-g3nem_A0.3070.9103.639threading_6YRTHYSSEITE--ELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGI--VQITAPKKKELFKL-IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRA--ETPLPLDPTGAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM--------------------KYFEEDAFLAQSPQLYKQIMMSGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---E---P---KLPFPRVSYDKALEILGDLG----KEIPWGEDIDTEGERLLGKYMMEPLYFLYQYPSEAKPFYIMKYDNKPICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLTP
7SP32xgta0.2950.9107.860threading_7---VKIRDLVK---HRNERVCIKGWIHRMRRQGKSLMFFILRDGTG--FLQVLLMDKLCQT-YDALTVNTECTVEIYGAIKEVP---NGHELIADFWKIIGNA--PPGGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
8SAM-T991x54A0.3740.9235.200threading_8-MIEKVYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVS---EFPIPENQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL--------------------KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPDPRKVLASDMLAPGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP
9MUSTER1x54A0.3870.9213.458threading_9IEKVYCQEV--KPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGI--VQAVVAKNVEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEF-PIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLK--------------------YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD-----LTTLKNT-EPPFPRISYDEAIDILQSKG----VNVEWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPDPRKVLASDMLAPGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP
10SPARKS3m4pa0.2820.9126.255threading_10--TPIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCE--PEKVKLLTRECSLEITGRLNAYAGKNHNLEMQVTEWKVIGES-PIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKSTL--------------------------FKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCEP

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.854 to 1b8aA
SCOP code=b.40.4.1
TM-score=0.862 to 1b8aA
SCOP code=b.40.4.1
TM-score=0.845 to 1b8aA
SCOP code=b.40.4.1
TM-score=0.836 to 1b8aA
SCOP code=b.40.4.1
TM-score=0.847 to 1b8aA
SCOP code=b.40.4.1