Template-based Modeling Results for DMA_ECOLI


  Submitted Primary Sequence

>Length 278
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCHHCCCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
55323121411101210031024102302000100001000002111220000001210010021022203200310220012222113001103321232321111000000001101201022123121212103233221122101100220230201020012001301321000012121222221311211222122310110030021025330100000220210220033020110202100002232332011000002222223344
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
1MUSTER2g1pB0.9840.8852.986threading_1--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLTNS----------FTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKV------------KVDELLALYKP--------
2SPARKS2g1pa0.9920.8786.231threading_2--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLN-----------SFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVV-------------KKVDELLALYKP--------
3PROSPECT22g1pA0.9920.8784.427threading_3--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAP-----------LNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVV-------------KKVDELLALYKP--------
4PPA-I2g1pB0.9800.8853.696threading_4--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLTNS----------FTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVK------------VKVDELLALYKP--------
5HHPRED-l2g1p_A0.9960.8788.401threading_5--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPL-----------NSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVK-------------KVDELLALYKP--------
6HHPRED-g2g1p_A0.9960.8787.229threading_6--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPL-----------NSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVK-------------KVDELLALYKP--------
7SP32g1pa0.9920.8786.186threading_7--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLN-----------SFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVV-------------KKVDELLALYKP--------
8SAM-T992dpmA0.2930.8855.911threading_8--TLQPFTKWTGGKRQLLPVIRELIPKYNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQELIEILKVH--QEYNSKEYYLDLRSADRDMMSEVQRAARILYMLRVNFNGLYRVNSKNQFNVPYGRYKNPKIVEELISAISVYINQLEIKVGDFEKAIVDVRTGDFVYFDPPYIPLFTS-----YTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEELYKDFNIHYVEGK------------ISEIIVT-----------
9MUSTER1yfjA0.2380.9062.709threading_9---MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGP-VLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRD----PLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDV--KILDGDFVYVDPPYLIT--VADYNKF----WSEDEEKDLLNLLDSLNDRGIKFGLSNVENTLLKEWSKKYNVKHLNKKYVFNIHSKEKNGTDEVYIFN----------
10SPARKS2dpma0.3000.8995.894threading_10--TLQPFTKWTGGKRQLLPVIRELIPKTNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQELIEILKVHQEY--NSKEYYLDLRSADRDMMSEVQRAARILYMLRVNFNGLYRVNSKNQFNVPYGRYKNPKIVEELISAISVYINNLEIKVGDFEKAIVDVRTGDFVYFDPPYIPL-----FTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEELYKDFNIHYV------------EGKISEIIVTNYEK-------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.846 to 2dpmA
TM-score=0.978 to native
SCOP code=c.66.1.28
TM-score=0.854 to 2dpmA
TM-score=0.982 to native
SCOP code=c.66.1.28
TM-score=0.832 to 2dpmA
TM-score=0.965 to native
SCOP code=c.66.1.28
TM-score=0.842 to 2dpmA
TM-score=0.977 to native
SCOP code=c.66.1.28
TM-score=0.843 to 2dpmA
TM-score=0.976 to native
SCOP code=c.66.1.28

  Experimental Structure

Download 2g1pB
SCOP code=c.66.1.28