Template-based Modeling Results for GSIC_ECOLI

Submitted Primary Sequence

>Length 306
MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEEHHCHHHHHHHHHHHHHHHHHHHHHCHHHHEHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK
321100210100000000000000000200210001210133022300220143010220001000200010020110201224220021002101101210100001111100000000112433101200100010010001001000001000020110101003000000000000000000000100011002101120010031220231000010003100000000000100100100000110010200020001002221110010000000000000100000001001121324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK
1	MUSTER	2onkC	0.183	0.788	1.013	threading_1	------MRLLFSALLALLSSIILLFVLL-----PVAATVTLQ-------------LFN---FDEFLKAASD-----------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKS-FPGKSVVEGIVDLPVVIPHTVAGIALLVVFG--GSFSPLKFVDA---LPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISGAVVV--IAYYPMIAPTLIYERYL-GLS----AAMPVAAILILLSLAVFVALRII-------
2	SPARKS	3dhwa	0.199	0.641	1.582	threading_2	---------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRNAKLYRTVSAIVNIFRSIP-----FIILLVWMIPF--TRVIVGTSIG-LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV-GAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD-------------
3	PROSPECT2	1ejlI	0.136	0.987	1.573	threading_3	TVNWSVEDIVKGIESQLQATQAARKLLSREKQPPIDNIIRAGL----IPKFVSFLGKTDCSPIQFAWALTNIASGTEQTKAVVDGGAIPAFISLLPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVDSCWAISYLTDGPNERIEMVVKKGVVPQVKLLGATELPIQTQKVIDAGALAVFKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSIIQVILDAISNIFNESVYFS
4	PPA-I	3dhwA	0.189	0.641	4.328	threading_4	---------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVIANAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIG-------LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMG-GAVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD-------------
5	HHPRED-l	3tui_A	0.201	0.683	4.854	threading_5	----------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRNAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTS-----IGL---QAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR-----
6	HHPRED-g	3tui_A	0.211	0.683	4.939	threading_6	----------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT----S-IGLQAAIVP---LTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR-----
7	SP3	2r6gg	0.149	0.853	1.642	threading_7	KARLFITHLLLLLFIAAIFPLLMVVAISLRQGN----FATGSLIP------------EQISWDHWKLA--------LGFSVITPPPFP--VLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPG-KATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLG----GIALHVWTIKGYFET-IDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAI-TEVPVASLLSYTGMQQYL--NPQNYLWGDFAAAAVMSALPITIVFLLAQ----------RWN
8	SAM-T99	3dhwA	0.179	0.637	0.652	threading_8	MW---------------------------------------------------------------------------------------LLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPGQIIANAKLYRTVSA-----IVNIFRSIPFIILLVWMIPFTRIGLQAAIVP---LTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV-GAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFA--------------
9	MUSTER	3dhwA	0.199	0.641	0.951	threading_9	---------------------------------------------------------------------------------------MWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRNAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVIVGTSIG-------LQAAIVPLTVGAAPFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAV-GAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGD-------------
10	SPARKS	2onkc	0.148	0.794	1.474	threading_10	-----MRLLFSALLALLSSIILLFVLLP-----VAATVTLQLFNFDEFLKAASD----------------------------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILA-RKSFPGKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGSFSPLKFVDALPGIVVAMLFVS---VPIYINQAKEGFAS-VDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISGAVVV-----IAYAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG---------

Predicted Tertiary Structure


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TM-score=0.822 to 2onkC SCOP code=f.58.1.1	TM-score=0.827 to 2onkC SCOP code=f.58.1.1	TM-score=0.783 to 3dhwA SCOP code=f.58.1.1	TM-score=0.776 to 1ialA SCOP code=a.118.1.1	TM-score=0.772 to 3dhwA SCOP code=f.58.1.1