Template-based Modeling Results for GSPD_ECOLI

Submitted Primary Sequence

>Length 650
MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR
CCHHHHHHHHHHHHHHHHCCHHHCCCCEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHCCCCEEECCCEEEEECCCEEEEECCCEEEEEEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIVGQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVRSANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYEPSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHGKSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYAKATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSKALVGSEDLPVLDENTFNSHAPAPSSR
1	PROSPECT2	2cn2A	0.097	0.915	1.541	threading_1	VTKWDNVVIGGGGGFPGIVFNETEKDLIYARADIGGADHFQDEYSYYGVESIATDPVDPNRVYIVAGYTNDWLPNGAILRSTDRGETWEKTILPRILYLGTRCGNGDYGVTWSKVESFPNPGTIIGVVWVVFD--------KSSSTPGNPTKTIYVGVADKNESIYRSTDGG------VTWKAVPGQPKGLLPHHGVLASNGNTRTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIVTSNAWWPDEYIFRSTDKNIWEWGYPERILHYEIDISAAPWLDWGTEKQLPEINPKLGWIGDIEIDPFNSDRYV----TGATIYGCDNLTDWDRGGKVKIEVKATGIEECAVLDLVSPPEGA----PLVSAVGDLVGFVHDDLKVGPKKHVPSYSSGTGIDYAELVPNFALVAKAVKKISFSYDGGR---NWFQPPNEAPNSVGGGSVAVAADAKSVIWTPENASPAVT------TDNGNSWKVCTNLGGAVVASDRVNGKKFYAFYFYISTDGGLTFTDTKAPQLPKSVNKIKAVPGKEGHVWLAARWRSTDGGYTFEKLSNVDTAHVVGFGKAAPGQDYA---IYITGKIGFFRSDD---------------------AGKTWVRINDDEHGYGAVDTAITGDPRVYAS
2	SPARKS	3ezja	0.480	0.305	3.181	threading_2	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVK------------------SGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESL---------------TQIVADERTNSVIVSGDPATRDKMRRLIRRLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	3ezjA	0.465	0.305	1.807	threading_3	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVK------------------SGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLE--------------------------------------------------------------------------------------------------SLTQIVADERTNSVIVSGDPATRDKMRRLIRRLD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	2ww8A	0.100	0.909	1.478	threading_4	AI--------------PPVGYKPSTKQWTVEVEKNGRTTVREEALSDQYPQTGTYPDVQTPYQIIKVDGSEKNGQH----KALNPNPYERVIPEGTLSKRIYQVNNLDDNSGKTVYEQKDKSVPLDVVILLDNARRAERAGEATRSLINYDQTSFTTNTKDYSYLKLTNDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQARQNSQKVIFHITDGVPTMSYPINFNHATFAPSYQNQLNAFFSKSPNKDGIL-------------LSDFITQATSGEHTIVRGDGQSYQMFTDK---TVYEKGAPAAFPVKPEKYSEMKA-----AGYAVIGDPINGGYIWLNWRESILAYPFNSNTAKITNHGNIAPDGYDVFTVGIGINGDPGTDEATATSFMQSISSKPENYTNVTDTTKILEQLNRHTIVTEKKSIENGTIDPADYTLTANDGSRLENGQAVGGPQNDGGKVLYDTTEKRIRVTGYLGTDEKVTLTYNVRLNDEFVSNKPKEVEQNTVRDFPIPKIRDVRKYPEITGDIEFIKVNKNDKKPLRPDYPDIYGAIDQNGTYQNVRQNKPIVAFQIVNGEVR--------------------DVTSIVPQDIPAGYEFTNDKHYITNEPIPPK
5	PPA-I	3ezjG	0.477	0.306	1.476	threading_5	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVK-----------------SAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT---------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-l	3ezj_A	0.472	0.303	6.577	threading_6	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPEND-VLKVVKS------------------GDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT--------------------------------------------------------------------------------------------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	1kb0a	0.075	0.862	1.449	threading_7	TGPAAQAAAAVIRANAAPTIGVDYAETRYSRLDQINAANVKDYVSASWSVVHAIDTR-TGNRIWTYDPQIDRSTGFKGCCD---VVNRGVALWKGKVYVGAWDGRLHQNTFEGQKGSLTITGAPRVFKIIGNGGAE-----------YGVRGYITAYDAETGERKWRWFS---------------VPGDPS------KPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISA---KNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPP----------------KSKPFGRL----LAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ-------GTADGRLVAYHAATGEKLEAPTGTGVVAAPSTYMV-------DGRQYVSVAV---------------GWGGVYGLAARATERQGPGTVYTFVVGGKLLQGVKYDPAKVEAGTMLYVANCVFCHGVPGVDRGGN--IPNFKGPAMVRGMPDFTGK
8	HHPRED-g	3ezj_A	0.485	0.305	6.037	threading_8	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKS------------------GDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT---------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	3ezjG	0.477	0.306	0.891	threading_9	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVK-----------------SAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLT---------------QIVADERTNSVIVSGDPATRDKMRRLIRRLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SP3	3ezja	0.480	0.305	3.277	threading_10	-------------------------ATFTANFKDTDLKSFIETVGANLNKTIIM---VQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVK------------------SGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESL---------------TQIVADERTNSVIVSGDPATRDKMRRLIRRLD-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.360 to 1sb6A SCOP code=d.58.17.1	TM-score=0.621 to 1vyhT SCOP code=b.69.4.1	TM-score=0.773 to 2ebsB SCOP code=b.69.13.1	TM-score=0.357 to 1sb6A SCOP code=d.58.17.1	TM-score=0.879 to 2ebsB SCOP code=b.69.13.1