Template-based Modeling Results for RODA_ECOLI


  Submitted Primary Sequence

>Length 370
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
CCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
5533333311012010000000000000000000011021220010110000000000000000201130020000000000000000020112224001000101102000120010000000020023222222132000000000000000012221010000000000000011021200000000000000000121023101200100001331222201200100000011002030123123221310123110000000021011000000000000000000100130322001000000000000100000000000000110000100110000000000000000021123222434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIGMMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRWLDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDLGTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPESDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVGILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGVPLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV
1MUSTER3zuxA0.1410.7840.838threading_1--------NILSKISIGKTFSLWAALFAAAAFFA-----PDTFKWAG--YIPWLLGIIMFGMGLTLKPDILFKHPKVVIIGVIAQFAIMPATA----CLSKLLNL------PAEIAVGVILVGCC---------PGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMQAAGMLMSIVKMVLLPIVLGLIVHKVLG-SKTEKLTDALPLVSVAAIVLIIGAVV---------------------------GASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGM------NSGLAAALAPVVAVP------GALFSVWHNISGSLLATYWAAKA------
2SPARKS2xwub0.1370.8861.175threading_2LQDSELFDSSVEAIVRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEKEQFRIYRVDISDTLMYVYE-MLGAELLSNLYDKLGRLLTSYSWQHTEALLYGFQSIAET-----IDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIG-------------ALSEWL-ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLM----------KQIHKT------------SQCMWLMQALGFLLSVEEILKNLHSLI
3PROSPECT21jdha0.0850.9571.761threading_3AVVNLKKEASRHAIMRSPQMVSAIVRTMQCTAGTLHNLSHHREGLLADSVLFYAITTLHNLLLHQEGAKMAVRLAGGLKFLAITTDCLQILAYGNQESKLIILASGGPTYTYEKLLWTTSRVLGMQALGLHLTDPSQRLVQNCLWTLRNLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL-----------HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLRRLVQLLVRAHQDTQEIVEGCTGALHILARDVHNRIVIRGLNTIPLF---VQLLYSPIENIQ--RVAAGVLCELEAAEAIEAEGA
4PPA-I3zuxA0.0910.6811.046threading_4LKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE------IQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLII------GAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIE--------VGMQNSGLAAALA----------------AAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------------------------------------------------
5HHPRED-l1j4n_A0.1490.5620.186threading_5MASEFKKKLFWRAVVAE-FLAMILFIFISIGSALGFHYKGAVQDNVKVSLAF-GLSIAGLLLSCQISVLRAIMYIIAQCVGAIVATAILSITSSNSLGLNAL--APGVSGQGIEIIGTLQ-LVLCVLATTDRRRRDLGGSGPGFSVALGHLLADYTGCGINPARSFGSSVITHN--FQDHWIFW-VGPFIGAALAVLIYDFILAPDLTDRVKVWTS----------------------------------------------------------------------------------------------------------------------------------------------------------
6HHPRED-g1j4n_A0.1300.5590.529threading_6MASEFKKKLFWRAVVA-EFLAMILFIFISIGSALGFPSTGAVQDNVKVSLAF---GLSIATLSCQISVLRAIMYIIAQCVGAIVATAILSITSSLSLGLNALAGVNSGQGLGIEIIGTLQLVLCVLATTDRRRDLGSGPLAIGFSVALGHLLADYTGCGINPARSFG----SSVITHNFQWIFWVGPF-IGAALAVLIYDFILASDLTDRVKVWTS----------------------------------------------------------------------------------------------------------------------------------------------------------
7SP31t90a0.1300.9571.004threading_7DVVNPATKEVLCQVPITKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLKEELAHLITIENGKNTKEALGEVGRGIENVEFAPSLMMGDSIATDVEAANYGVFILKPSERT-PLLTEKLVELFEKAGLPK---GVFNVVYGAHDVVNGILEHPEIGVGEYVYKKGSETIVLNDANLEDTVTNIVGAAFGSAVTVEEGIADEFMAKLQEKVNGLDDGVFLGKKRTLSYIEKGLGAVCD-GRENVSDDGYFVGPNVTTE--MTIWKDE--IFAPVLSVIRVKN-LKEAIEIANKSE--FA--NGACSNAIRYFRENIDAGML-GILGVP-APMAFFPFSGWKSSFFTLHANGKDSVDTRKKVVTARY
8SAM-T993a2rX0.1620.6510.548threading_8IADFGSKIGFKGQEDLGNGMKAIWQLEQKASIAGTNSGWGNRQSFIGLKGGFGTVRAGNLNTVLKDSGDNVNAWESGSNTEDVLGLGTIGR---------------------------------------ESREISVRYDSPVFAGFSGSVQYVPRDNANDVDKYKHTKSSRESYHAGLKYENAGFFGQYAGSFANTANAHPVKDYQVHRVVAGYDANDLYVSVAGQYEAAK-------NNEVGSIKGKK--------------------------------------HEQTQVAATAAYRFGNVT------------------------------PRVSY----------AHGFKAKVNGVKDA-----
9MUSTER3gi9C0.1470.9220.794threading_9MELKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVIAFIHKAINIITGALSILLWMSYVISIAL--AKGFPLIAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFA-PDLAVSGMIFASAIFFLSYMGIEIFISILIVMFVYVGVAISAIGNLPIDELIKALAVAA-----KPFLGNLGFLLISIGSSAMNATIYGGASLAKDGELPEWFK-VLFALLMEGVASITSAVFMVIYLFVILSHYILIDEVGGRFSFIVVLGVFLLLLYYQWIT--------R------------FVFYGIIATFIGVLIFEIIYRKVTKRTF
10SPARKS1jdha0.0910.8301.040threading_10LLHQEGAKMAVRLAGGLQKMVALLVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS-----------VCSSNKPAIVEAGGMQADPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL-------LGSDDI--NVVTCAAGILSNLTCNNYKNKMMVCVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL------------HYGLPVVVKLLHPPSH-------------------WPLIKATVGLIRNLALCPANHAPLREQG-----AIPRLVQLLVRAHTQFVEGVRM-------EEIVEGCTGALHILARDVHNRIVIRGL

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.404 to 2r2vA
SCOP code=h.1.3.1
TM-score=0.416 to 2r2vA
SCOP code=h.1.3.1
TM-score=0.589 to 1qgkA
SCOP code=a.118.1.1
TM-score=0.667 to 1wa5B
SCOP code=a.118.1.1
TM-score=0.421 to 1u6gC
SCOP code=a.118.1.2