Template-based Modeling Results for PHOP_ECOLI

Submitted Primary Sequence

>Length 223
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCEEEECCCCEEEECCEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
2100011122201210121044200200002103100100232210000000001422002002101423220000000022113110210101010100100203000000110122222222200000202001221201134120301111010000012132310113000320021132331200100001014204433332001001110011225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
1	MUSTER	1ys6B	0.336	1.000	3.929	threading_1	PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTASETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
2	SPARKS	1ys6a	0.330	0.991	4.275	threading_2	PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARV--DDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
3	PROSPECT2	1ys6A	0.330	0.991	4.639	threading_3	PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARVD--DRVAGLEAGADDYLVKPFVLAELVARVKALLRRTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
4	PPA-I	1ys6B	0.332	1.000	4.605	threading_4	PRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSSSSETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
5	HHPRED-l	1kgs_A	0.346	0.933	3.045	threading_5	VRVLVVEDERDLADLITEALKKE-FTVDVCYDGEEG---ALNEPFDVVILDI-LPVHDGWEILKS-RESGVNTPVL-LTALSDVEYRVKGLN-GADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLV-NKNRVVTKEELQEHLW-----VFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARD-
6	HHPRED-g	1kgs_A	0.344	0.937	2.702	threading_6	VRVLVVEDERDLADLITEALKKE-FTVDVCYDGEEG---ALNEPFDVVILDI-LPVHDGWEILKS-RESGVNTPVL-LTALSDVEYRVKGLN-GADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLV-NKNRVVTKEELQEHLW-----VFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARDE
7	SP3	3r0ja	0.318	0.973	4.161	threading_7	ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVPG---DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG--KNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG-EKRLLHTLRGVGYVLREP
8	SAM-T99	1ys6B	0.333	0.996	3.377	threading_8	-RVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATETITVGPLEVDIPGRRARVNGVDVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGGGPRLLHTVRGVGFVLRMQ
9	MUSTER	3r0jA	0.318	0.973	3.584	threading_9	ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVPG---DGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG--KNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG-EKRLLHTLRGVGYVLREP
10	SPARKS	3r0ja	0.318	0.973	4.211	threading_10	ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVP---GDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG--KNVRLTFADIELDEETHEVWKAGQPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTG-EKRLLHTLRGVGYVLREP

Predicted Tertiary Structure


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TM-score=0.986 to 1ys6B TM-score=0.878 to native SCOP code=a.4.6.1	TM-score=0.986 to 1ys6B TM-score=0.879 to native SCOP code=a.4.6.1	TM-score=0.954 to 1ys6B TM-score=0.893 to native SCOP code=a.4.6.1	TM-score=0.956 to 1ys6B TM-score=0.885 to native SCOP code=a.4.6.1	TM-score=0.984 to 1ys6B TM-score=0.878 to native SCOP code=a.4.6.1

Experimental Structure

Download 2pkxB

SCOP code=c.23.1.1