Template-based Modeling Results for PLDB_ECOLI

Submitted Primary Sequence

>Length 340
MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV
CCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV
5543333232212101211201113113222201021232010000103144321000000010100210120020014100000000121103112222222201023022002001100220132033221000000100000000023122202000000110112241121002100100212121331111122412222122322131331032002102312202111010200110010022012102322000000002324102230022002012212331320200002201110012232002200300020024112222442334
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVRFVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADPHLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIALTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRYRRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNRMHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSGNRSTEV
1	MUSTER	3jw8A	0.198	0.818	1.903	threading_1	RRTPQSIPYQ--------------------DLPHLVNADGQYLFCRYWKPTGPKALIFVSHGAGEHSGRYEELARL--GLDLLVFAHDHVGHGQSEG------ERVVSDFHVFVRDVLQHVDSQ-KDYPGLPVFLLGHSGGAIAILTAAER-PGHFAGVLISPLVLANPESATTFKVLAAKVLNLVLP-----------NLSLGPIDSSVLS----RNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLL------ELAKSQDKTLKIYEGAYHVLHKELPEVTNSVFHEI--WVSQRTA---------
2	SPARKS	3pe6a	0.221	0.824	3.688	threading_2	---------------------------PRRDLPHLVNADGQYLFCRYWAPTGPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS-----EGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN---PESATTFKVLAAKVLNSVLPNLSSG-----------PIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKS-----QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTA---------
3	PROSPECT2	3hjuA	0.203	0.853	3.802	threading_3	PRRTPQSIPYQD-------------------LPHLVNADGQYLFCRYWKPTTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQSE-----GERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLV----------LPNLSLGPIDSSVLSRN----KTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELA-----KSQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTATA-------
4	PPA-I	3jw8A	0.181	0.826	1.978	threading_4	------------------SPRRTPQSIPYQDLPHLVNADGQYLFCRYWKPTGPKALIFVSHGAGEHSGRYEELARLG--LDLLVFAHDHVGHGQSEG------ERVVSDFHVFVRDVLQHVDSQKD-YPGLPVFLLGHSGGAIAILTAAER-PGHFAGVLISPLVLANPESATTFKVLAAKVLNLVLPNLSL---------------GPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLL------ELAKSQDKTLKIYEGAYHVLHKELPEVTNSVFHEIN-WVSQRTA---------
5	HHPRED-l	1iup_A	0.135	0.785	1.464	threading_5	----------------------------NLEIGKSILAAGVLTNYHDVGEG---QPVILIHGSGPGYANWRLTIPALS-KFYRVIAPDMVGFGFTDRPENYNY---------SKDSWVDHIIGIMDALEIEKAHIVGNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVTEGL--NAVWGYTPSIENMRNLLD----IFAY-----DRSLVTDELARLRYEASIQPGFQEFSSMFPEPRQRWIDALASSDEDIKTLPNETLIIHGREDQVVPLSSSLRLGEL-------IDRAQLHVFGRCGHWTQIEQTD---RFNRLVVEFFNEA-----------
6	HHPRED-g	1tht_A	0.104	0.765	1.267	threading_6	---------------------QC-----KTIAHVLRVNNGQELHVWETPPKEKNNTILIASGFARRMDHFAGLAEYLSTNGFHVFRYDSLHHV-------------EFTMTTGKNSLCTVYHWLQTK-GTQNIGLIAASLSARVAYEVISDLE--LSFLITAVGVVNLR-----DTLE----KAL---GF--DYLSLP--IDELPNDLDFEGHKLGSEVFVRDCFEHH----------------WDTLDSTLDKVANTSVPLIAFTANNDDWVKQEEVYDMLAHIRT-----GHCKLYSLLGSSHDL-GENLVVLRNFYQSVTKAAIAMDGGSLEIDVDF
7	SP3	3pe6a	0.215	0.847	3.996	threading_7	-----------------PRRTPQSIPYQ--DLPHLVNADGQYLFCRYWAPTGPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS-----EGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLAN---PESATTFKVLAAKVLNSVLPNLSSG-----------PIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELAKS-----QDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTA---------
8	SAM-T99	3jw8A	0.207	0.782	3.404	threading_8	-----------------------------QDLPHLVNADGQYLFCRYWKPTGPKALIFVSHGAGEHSGRYEELARLGLDL--LVFAHDHVGHGQSEGE-----R-VVSDFHVFVRDVLQHVDSQKDY-PGLPVFLLGHS-GGAIAILTAAERPGHFAGVLISPLVLANPESATTVLAAKVLNLVLPNLSLGPI-------------DSSVLSRNKTEVDIYN----SDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLELAK------SQDKTLKIYEGAYHVLHKELPEVTNSVFHEI-NWVSQR-----------
9	MUSTER	2wtnB	0.151	0.721	1.376	threading_9	-------------------------------GAMYIDCDGIKLNAYLDMPKNNPPLCIIIHGFTGHSRHIVAVQETLNEIGVATLRADMYGHGKSDGKFEDH------TLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDIIKALIPLSPAA------------MIPEIARTGELLGLKFDPENIPDELDAWDGRKLK------GNYVRVAQTIR---------------------VEDFVDKYTKPVLIVHGDQDEAVPYEASVAFSKQY-------KNCKLVTIPGDTHCY----DHHLELVTEAVKEFMLEQIAK--------
10	SPARKS	3hjua	0.203	0.853	3.015	threading_10	-----------------PRRTPQS--IPYQDLPHLVNADGQYLFCRYWKPTTPKALIFVSHGAGEHSGRYEELARMLMGLDLLVFAHDHVGHGQS-----EGERMVVSDFHVFVRDVLQHVDSMQKDYPGLPVFLLGHSMGGAIAILTAAERPGHFAGMVLISPLVLANPESATTFKVLAAKVLNLV--------------LPNLSLGPIDSSVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLTVPFLLLQGSADRLCDSKGAYLLMELA-----KSQDKTLKIYEGAYHVLHKELPEVTNSVFHEINMWVSQRTATA-------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.732 to 1a8qA SCOP code=c.69.1.12	TM-score=0.730 to 1a8qA SCOP code=c.69.1.12	TM-score=0.750 to 1a8qA SCOP code=c.69.1.12	TM-score=0.728 to 1a8qA SCOP code=c.69.1.12	TM-score=0.728 to 1a8qA SCOP code=c.69.1.12