Template-based Modeling Results for PSD_ECOLI


  Submitted Primary Sequence

>Length 322
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHEEEECCCCCCCCCCCCCEEEECCCCEEEEEEEECCCCEEEEECCEECHHHHCCCCHHHHHHCCCCEEEEEEECCCCEEEEEEECCCEEEEEEEECCCEECCCHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEEEEECCCCCCEEEEEECCCCCCCCCEEECCCEEEEEECCCEEEEEEECCCEEECCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
4431011001100021001200000022311201310020002112020320332322223101200012033322222223200000020100100203433101020221102100222220022133000000000130000000002010110000202001103200321331112011000102141000000000000000010011020112442212101122233332120221211010101000000012220101330332210211210000122221232222223233231333223223233344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKYYKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEEDKILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYVPGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTITPPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSVTKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV
1PROSPECT21s8eA0.0780.8761.547threading_1MYEQFHKPQREEEFAEAFKNALEIAVQENVSRPSPGTLKKAIALLQ-IPKEHSIPTQRGPSVLNLLLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSE-------------ARGEDYFEIGLGDLPEGYLY------YALRYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERY------GVNKGFYIVEDFKPRFVEIKVFIDVKIKGSEERLIPLIPKNAYVRL--NIGW-----------RKPFDLTEIKELLNVEYLKIDTW-RI
2HHPRED-l3our_B0.1360.4351.878threading_2---------------------------------------------------------------------------------AIEIIAPLSGEIVNIEDVP--------------------DVVFAEKIVG---DGIAIKPTG-NKMVAPVNGTIGKIF-----------------------ETNHAFSIESDDGVELFVHFGIDTVEL------------KGEGF------TRIAEEGQTVKAGDTVIEFDLASLTPVVINMDEIKELN-KLS-GSVVVGTPVLRVTK----------------------------------
3PROSPECT21ii7a0.0560.8881.478threading_3MYEQFHKPQREEEFAEAFKNALEIAVQENVSRPSPGTLKKAIAL----LQIPKEHSIRGPSVLNLLLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREVSE-------------ARGEDYFEIGLGDLPEGYLY------YALRYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERY------GVNKGFYIVEDFKPRFVEIKVFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKI-------DTWRI
4HHPRED-l2gpr_A0.1720.4501.335threading_4---------------------------------------------------------------MWFFNKN------------LKVLAPCDGTIITLDEVE--------------------DEVFKERMLGDGFAIN---PKS-NDFHAPVSGKLVTA----------FP-------------TKHAFGIQTKSGVEILLHIGLDTVSL------------DGNGF------ESFVTQDQEVNAGDKLVTVDLVKSPIIFTNNGGKT--LEIVKMGEVKQGDVVAILK-----------------------------------
5PROSPECT21qfma10.0960.9691.356threading_5MLSAWLEDPDSEQTKAFVEAQNKITVPFLEQPIRGLYKERMTELYDYP----KYSCHFKKGKRYFYFYNTGLQNQRDSLEGEARVFSGSDWVTIKFMKVDGAKELPDVSMAWTHDGKGKSDGTETSTNLHQKLYYHVLEPKWMGGAELSDDGRYVLLSIREGPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYV------TNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEWVACVRSNFLVLCYLHDVKNTLATGALLKIFPLEVGSVVGYSGQKKDTSFLSPGIIYHCDLTKEELEPRVFREVTV
6HHPRED-l1f3z_A0.1130.4381.131threading_6---------------------------------------------------------------------------------TIEIIAPLSGEIVNIEDV--------------------PDVVFAEKIVGDGIAIK---PTG-NKMVAPVDGTIGKIF-----------------------ETNHAFSIESDSGVELFVHFGIDTVEL------------KGEG------FKRIAEEGQRVKVGDTVIEFDLATLTPVVISNMD-EIKELIKLSGSVTVGEPVIRIKK----------------------------------
7PROSPECT21fc6a0.1000.9631.336threading_7VTSEQLLFLEAWFNGQSWFKLRETYLKKEPD--RRAQTYDAIR----KLAVLDDPFT-RFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGIVTVDGTAVKGSLY---DVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTGLVLDIRNNGGGLFPAGVNVARLVDRGDLVLIADSQGIADGNSIDSATPLVVLVNRGTRGLIAGERGLIQTVVDLSDGSGVAV--TVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVAPRLF
8PROSPECT21io1a0.0620.9501.274threading_8NIKGLTQASRNANDNNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNESGQTQFNGVKVLAQDNTLTIQVGAQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDTTGKYYAKVTGTGKDGYYEVSVDKTNGEVTLAGGATSPLT----GGLPATATEDVKNVQVAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYSATQ------NKDGSISINTTKYTADDGTSK------TALNKLGGADGKTEVVSIGGKTYAASKAEGHNFKAQPDLAEAAATTTENPGNTVNNLTSAR
9MUSTER2opwA0.1350.8290.648threading_9QLQKFQQDLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQ-LRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPV--------------FKSITHSFQTLARSLGLQMPVVVQS----MYIFKQPHFGG-EVSPHQDASFLYTEP---------LGRVLGVWIAVELENGCLWFIP------GSHTSGVSRRMVRAPPGTSFLGSEPARDNSLFVPTP-------VQRG--ALVLIHGEVVHKSKQNLSDRS-RQAYTFHLMEASGTTWSPENWLQPTAELPFPQLYT----------
10SPARKS1l0qa0.1020.9100.654threading_10VIDVTSNKVTATIP----------VGSNPGAVISPDGTKVYV--ANAHSNDVSIIDTATNN-----VIATVPAGSSPVSPDGKQVYVTASSTLSVID-TTSNTVAGTVKT--------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI--AVTPDGTKVYVANFSSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYNVDKYFNTVSIDTGTNKITARIPVGPDPAGIAVDGKKVYVALSFNTVSVIDTATNTITATAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIF-LSEPV

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.680 to 1s8eA
SCOP code=d.159.1.4
TM-score=0.632 to 2gprA
SCOP code=b.84.3.1
TM-score=0.645 to 1s8eA
SCOP code=d.159.1.4
TM-score=0.646 to 2gprA
SCOP code=b.84.3.1
TM-score=0.546 to 1n6fA
SCOP code=b.36.1.3