Template-based Modeling Results for RBSC_ECOLI

Submitted Primary Sequence

>Length 321
MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ
553332223322011002101000000000000000022000031001002100110000000000000110100000000000000000011302000000000000000000000000203011000000000001000000021212221222011001111212112011000000000000101123131010000001111003112030320100000000000000000000201112121010100000000000000121030200000000000000200010010111011001000000000013345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTTQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTINNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVAAALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADLFGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ
1	PROSPECT2	1ejlI	0.106	0.969	1.533	threading_1	GTVNWS------VEDIVKGINQLQATQAARKLLSREKQPPILIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV--RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTKEATWTMSNITAGRQDQIQQVVNHGLVPFLV--GVLSKADFKTQKEAAWAITNYTQIVYLVHCGIIEPLTKIIQVILDAISNIFQAAEK
2	PPA-I	2nq2A	0.123	0.888	1.228	threading_2	---------------YPKILFGLTLLLVITAVISLGIGRYIDPVQQQVIFQVRLPRILTALCVGAGLALSGVNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQ----YISDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSIL-LSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISG-------SIGWVGLIIPHLSRMLVGASLL------PCTMLVGATYMLLVDNVARSLSIPISILTALIGAPLFGVLVYKL---
3	HHPRED-l	2nq2_A	0.150	0.854	1.228	threading_3	----------Y-PKI----LFGLTLLLVITAVISLGIRQI----DVQQIFQVRLPRILTAVGAGLALIFRNIGVTSGSAFG--GTLA-IFFG--FSLYGLFTSTILFGFGTLALVFLFSFK---SLILIGMILSGLFSALVSLLQYISD---TEEKLP-SIVFWLMGSFATSNWEKLLFFFVPFLLCSSI-LLSLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQV----AISG---SIGWVGLIIPHLSRMLVGANH----QSLPCTMLVGATYMLL-VDNVADAEIPISILTALIGAPLFGVLVYKL---
4	PROSPECT2	1xm9A	0.109	0.944	1.462	threading_4	LSSQDECFQDESAKQQVYQLGGICKLVAAGALRNLVFRS---TTNKLETRRQNGIREAVQLTGLLWNLSSTDELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYNCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGK-----------SKKDATQNLTASKGLMSSGMSQLIGKGLPQIARLASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSAC--YTVRNLMA--SQPQLAKQYFPKAAEAARLLLSDMWS
5	PPA-I	1l7vA	0.139	0.850	1.068	threading_5	-----LTLARQQQRQNIRWLLCLSVLLLALLLSLCAGEQWISPGDVWQIRLPRTLAVLLVGAALAISGAAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALTW--AIYFSTSVDLRQLYWGGFGGVDWRQSWLLALIPVLLWICCQSRPNLALG---------EISARQLGLPLWFWRVAATGWVGVSVALAGALVIPHI--LRLCGLTDHRVLLPGCALAGALALAAAEGVVTATLGAPVFIWLLLKA------------------------------
6	HHPRED-l	2qi9_A	0.137	0.866	1.227	threading_6	-LTLARQQQ-----RQNIRWLLSLSL-LLALLLSLSAEDWFTPRG-ELVWQIRLPRTLAVVGAALAILFENLGVSNGAGV--GLIAAV-LLGQGLPNWALGLSAIAGALIITLILLRFARR-HLSTLLAGVALGIISSAL-TWAIYFS----TSVDLRQ-L-YW--GGFGGVDWRQSWL-LALIVLLWIS---SQSRP---LALGEISARQLGLPLWFWRNVLVAATGW-VGVSV----ALAG---AIGFIGLVIPHILRLSGLTDH----RVLLGCALAGASALLLADIVAAAAELPIGVVTATLGAPVFIWLLLKA---
7	PROSPECT2	1ee4a	0.075	0.960	1.422	threading_7	QE----------LPQMTQQLNQEQLSATVKFRQILSREHRPPIDVVIQVVPRLVEMLQLEAAWALTNIASGTSAQTKVVVDAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLA--KLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIIKKEACWTISNITAGNTEQIAEDKTKKEACWAISNSSGGLQRPDIIRYLVSQGCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEA
8	PROSPECT2	1jdha	0.127	0.981	1.417	threading_8	AVVNLIRKKEASRHAIMRSPQMVSAIVTAGTLHNLSHHKMLGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDD------INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLAEMAQNAVRLHYGLPLLHPPSHWPLIKATVGLIRNLALCEQGAIPRLVQLLIVEGCTGALHILARDVHNRIVIRGIQRVAAGVLCELAQ
9	PROSPECT2	3a6pA1	0.087	0.966	1.410	threading_9	MDPNSTQRYRLEALKFCEEFKEHFGLQILELIANGTLNILEEENHIKDALSRIVVEMIKMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWAENCKLLEILCLLLNEQELRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVF-----------LKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTRHEILSRDPLLLAIIPKYLRASMTEYSRFDFDSAFFNSSRAQQGEVMRLACRLDPK
10	MUSTER	2nq2A	0.161	0.850	0.822	threading_10	---------------YPKILFGLTLLLVITAVISLIGRYSLSVPQI-----PVQQQVIFQVRLPRILTA----LCVGAGLALSGVVLQGIFRNPNPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSFLLM-GMILSSDTEEKLPSIVFWLMGSFATSNWEKLLFFFVPFLLCSSI---SLSWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAIS---------SIGVGLIIPHLSRMLVGASLL------PCTMLVGATYMLLVDNVARSLSIPISILTALIGAPLFGVLVY-----

Predicted Tertiary Structure


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TM-score=0.787 to 1l7vA SCOP code=f.22.1.1	TM-score=0.783 to 1ialA SCOP code=a.118.1.1	TM-score=0.772 to 1l7vA SCOP code=f.22.1.1	TM-score=0.746 to 1l7vA SCOP code=f.22.1.1	TM-score=0.748 to 1t5jA SCOP code=a.209.1.1