Template-based Modeling Results for RFAP_ECOLI


  Submitted Primary Sequence

>Length 265
MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
CCCCCHHHHHHHCCCCCHHHHHCCCCCEEECCCCCCEEEEEECCEEEEEEEEECCCHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
5531332112113232111202312120022242321010202220000110102103200320022312111012102002101312030020000012232222210000012022112012002221323332311220022002002300301020200200000021122244430200000033021223022211020010001001302121210010021112112230121123102101110321323224424
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMVELKEPLATLWRGKDAFAEVKKLNGEVFRELETRRTLRFELSGKSYFLKWHKGTTLKEIIKNLLSLRMPVLGADREWHAIHRLSDVGVDTMKGIGFGEKGLNPLTRASFIITEDLTPTISLEDYCADWAVNPPDIRVKRMLIARVATMVRKMHTAGINHRDCYICHFLLHLPFTGREDELKISVIDLHRAQIRAKVPRRWRDKDLIGLYFSSMNIGLTQRDIWRFMKVYFGMPLRKILSLEQNLLNMASVKAERIKERTQRKGL
1MUSTER2jiiB0.1160.9130.983threading_1--TENLYFQSMTTSLEALP-----TGTVLTDKSGRQLYEAAPTSQKFSLKLDAKDGRLFNEQNFFQ----RAAKPLQVNKWKKLYSTPLAIPTCMGFGVHQDK----YRFLVLPSLGR--SLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQS-----QVTLAGYGFAFRGKHVAYVEGSRSPHE-MDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPF
2SPARKS3op5a0.1500.8792.567threading_2---------------EQFA-----VGEIITDMAAAAIYLADMNDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKL--KYLGVPKYWGSGLHDKNG-KSYRFMIMDRFGS--DLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ-----VYLVDYGLAGVHKAYAADPK-RCHDGTIEFTSIDAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASL
3PROSPECT22qg7A0.1110.9211.507threading_3YPDRSEKAKELLKKYVSKYVMLHYGKDLVNPNEVDSLEFQIINGTNILIKVKDMSKQAKYLIRLYGPTDEIINREREKKISCILYNKNIAKKIYVFF----------TNGRIEEFMDGYALYKELQVTQKVPGTRPSFLWNTIWKYFHLLNEERKKICCHCDLLSSNIIN-----TVGEGDSISFIDFEYSCPM------ERAYDIANHFNEYAGFNCSKEEEYHFIMHYLGTDDEELINQLIREINYGMTRLTASCLPIFRSKV
4PPA-I3en9A20.1350.7251.434threading_4--------------------------------AEADIKRDSYLDFDVIIKERVKKGY---RDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNK-------RIMMSYING-----------KLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKD---------LYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV-----------
5HHPRED-l2h34_A0.1690.7131.250threading_5------------------------LRRLVGRGG-GDVYEAEVRERIVALKL-SETL--------SSDPVFRTR-QREARTAGRLQEPHV--VPIHDFGEID-----GQLYVD-RLING-VDLAA-LRRQ--GPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSA-------DDFAYLVDFGI----------------GTLYY-APERFSYRADIYALCVLYEGPPYQGD--QLSV-GAHINQVIARG-AKNDRYA-
6HHPRED-g1csn_A0.2070.8041.671threading_6--------------------------NVVGRRIGEGSFGVIFNNQQVAIKFE--------------PRRSDAPQRDEYRTYKLL-AGCTGIPNVYYFGQEGL-----HNVLVIDLLGP--SLEDLLD-LCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSK--NANMIYVVDFGMVKFYRHIPYRE-KKNLSGTARYMSGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSAGF
7SP33op5a0.1480.9212.851threading_7QFAVGEIITDMAAAA------WKVGGCIYLADMNSSESV--GSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKL--KYLGVPKYWGSGLHDKNGK-SYRFMIMDRFGS--DLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKN-----PDQVYLVDYGLAGVHKAYAADPK-RCHDGTIEFTS-IAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASL
8SAM-T993f69B0.1730.8081.207threading_8-------------------------GEILGFGGMSEVHLARDDHRDVAVKV--------LRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLPY---IVMEYVDG-VTLRDIVHTE--GPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANILIS-------ATNAVKVVDFGIARAIA--DSGNSVQTIGTAQYLSPEQVDARSDVYSLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEG---
9MUSTER2izsA0.1560.8450.963threading_9VLMVGPNFR----------------GKKIGCGNFGELRLGKNTNEYVAIKLEPMKS-------------RAPQLHLEYRFYKQLGSGGI--PQVYYFGPCGKY-----NAMVLELLGP--SLEDLFDLCD-RTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQ--VIHIIDFALAKTKKHIPYREHKSLTGTAINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPI
10SPARKS2lava0.1470.9472.504threading_10MPRVKAAQAGRQSSAKRHLAEQFAVGEIITDMAKKEIYLADMSDAPCVVKVEPSDNLFTELKFYQRAA----KPEQIQKWIRTRKLKYLGVPKYWGSGLHDKNG-KSYRFMIMDRFGS--DLQKIYEA-NAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ-----VYLVDYGLAGVHKEYKEDPK-RCHDGTIEFTSIDAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASL

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.657 to 2csnA
SCOP code=d.144.1.7
TM-score=0.660 to 2csnA
SCOP code=d.144.1.7
TM-score=0.631 to 1ckjA
SCOP code=d.144.1.7
TM-score=0.571 to 2b0qA
SCOP code=d.144.1.6
TM-score=0.532 to 1nd4A
SCOP code=d.144.1.6