Template-based Modeling Results for SKP_ECOLI


  Submitted Primary Sequence

>Length 161
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
CHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEECCCCCCCCHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
42200100000000000021222000000010032023212113202321321132024023202311431342322322230231022123212310320243223212321130032022003200432401000022000012132320122014315
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
1MUSTER1u2mC0.8180.8511.994threading_1-------------------GADKIAIVN-GSLFQQVAQKTGVSNTLENEFKGRASELQRETDLQAKK----KLQSKAGSDRTKLEKDVAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
2SPARKS1sg2a1.0000.8763.900threading_2--------------------ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
3PROSPECT21sg2A1.0000.8762.196threading_3--------------------ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
4PPA-I1u2mC0.8180.8513.187threading_4-------------------GADKIAIVN-GSLFQQVAQKTGVSNTLENEFKGRASELQRETDLQAKK----KLQSKAGSDRTKLEKDVAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
5HHPRED-l1u2m_A1.0000.5096.625threading_5--------------------ADKIAIVN-GSLFQQVAQKTGVSNTLE---------------------------------------------------------RARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV-
6HHPRED-g1u2m_A1.0000.5166.397threading_6--------------------ADKIAIVN-GSLFQQVAQKTGVSNTLE---------------------------------------------------------RARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
7SP31sg2a1.0000.8764.290threading_7--------------------ADKIAIVNMGSLFQQVAQKTGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
8SAM-T991u2mC0.9030.8323.260threading_8--------------------ADKIAIVN-GSLFQQVAQKTGVSNTLENEFKGRASELQRETDLQAKKQSKAG-----SDRTKLEKDVAQ-RQTFAQKAQAFEQDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK
9MUSTER2eh3A0.1150.9190.774threading_9TKERILEVSKELFFEKVEEIVKRANL-SKEELITEIRTHKKIISLFEENKEKTPEELLEFLEVLYREKKVVYIFLFDLL--CSEKFRNIYFEKIEDAKRRFEKFLEKHFPSKAEILSEIILGFLRQLILH----YVIKE------ERELPFLKEKLREGLK
10SPARKS1u2ma0.7140.5221.360threading_10-----------------------------------------------------------------------GADKIAIVNGSLFQQVAQK-TGVSNTL-----ERARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQVK

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.759 to 1u2mC
TM-score=0.702 to native
SCOP code=f.48.1.1
TM-score=0.759 to 1u2mC
TM-score=0.702 to native
SCOP code=f.48.1.1
TM-score=0.620 to 1u2mC
TM-score=0.740 to native
SCOP code=f.48.1.1
TM-score=0.620 to 1u2mC
TM-score=0.740 to native
SCOP code=f.48.1.1
TM-score=0.759 to 1u2mC
TM-score=0.702 to native
SCOP code=f.48.1.1

  Experimental Structure

Download 1sg2C
SCOP code=f.48.1.1