Template-based Modeling Results for UBID_ECOLI

Submitted Primary Sequence

>Length 497
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEECCCCCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCEEECCEEEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEEEEECCCHHHHHHHHHHHHHCCCHHHCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
45322131022002103532202102230121110020022024221200002103112120000000012100200233322103200200121322322310320021011013113121221232302120122331103200001012321110000000002114443100000000010422000100113101100111111333330200000001000000000101321000100010222301002021130301020100010001123223211212111112312200001021000232000000011312210000000002000200233013001010023100000000002231221021001001001221210100000132020410310010002202222000002301012012112221210100010014132323332142143133002101300330102432434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
1	MUSTER	2idbA	0.963	0.932	3.627	threading_1	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIR-WLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVW---SFLRQFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLG-SKGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
2	SPARKS	2idba	0.983	0.932	4.158	threading_2	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGV--WSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGS-KGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
3	PROSPECT2	2idbA	0.972	0.932	5.842	threading_3	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVA--GGQEDVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPIT-CWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVG---VWSFLRQFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
4	PPA-I	2idbA	0.957	0.932	7.614	threading_4	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQEDVSA--LREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIR-WLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVW---SFLRQFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGS-KGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
5	HHPRED-l	2idb_A	1.000	0.930	5.392	threading_5	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVA-G--QEDVSALREVGKLLAFLKEPEPPKGFRDL-------------PTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRV--GVWSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
6	HHPRED-g	2idb_A	1.000	0.930	0.349	threading_6	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVA-G--QEDVSALREVGKLLAFLKEPEPPKGFRDL-------------PTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRV--GVWSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
7	SP3	2idba	0.985	0.932	1.995	threading_7	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFRD-------------LPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLI-RWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGV--WSFLRQF-YTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGS-KGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIF------
8	SAM-T99	2idbA	0.972	0.930	10.049	threading_8	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAG--GQEDVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKL-IRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVGVWSFLR---QFYTKFVIVCDDDVNARDWNDVIWAITTR-DPARDTVLVENTPIDYLDFASPVSGLGSK-GLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAI-------
9	MUSTER	2idbA1	0.981	0.636	2.475	threading_9	-----YNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYS-PVLCNLFGTPKRVAGGQE--DVSALREVGKLLAFLKEPEPPKGFR-------------DLPTKRLRGAPCQQKIVSGDDVDLNRIPI-TCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIR-WLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEV--------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	2ek8a	0.105	0.765	0.567	threading_10	--------------------------------------------------------------------ADHQITKRT---DAENMYNTIQFLS--QAPRVAPEELKAVRYIEQQFKSYGYHVEVQPYTAPSEVTLKTEKKEGEAFTYSPNSD------VTAELVYVGLGTTAD----VAGKDLNGK----IALIQRGNISFADKVRNAAKQG--AKAVIIYNNTDGKLNGTLGGSDASFEGDALAANLRAGEKITATVKVAGAEVKTLTSHNVIATKKPDANK------------KNTNDIIIIGS----------HHDSVEKAPGANDDASGVAVTLELARVMSKLKTDLRFITFGAEENGLIGSKKYAASLSEDEIKRTIGMFQLDMVGSKDAGDLIMYTIDGKKNRVTDLGAAASSRLSGV--LPYGQEGRSDH----ESFHALGIPAALFIHAPVEPWYHTPNDTLDKISKEKLDNVADIVGSAQAARPGELV

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.933 to 2idbA TM-score=0.966 to native SCOP code=b.45.1.3	TM-score=0.936 to 2idbA TM-score=0.969 to native SCOP code=b.45.1.3	TM-score=0.933 to 2idbA TM-score=0.966 to native SCOP code=b.45.1.3	TM-score=0.934 to 2idbA TM-score=0.967 to native SCOP code=b.45.1.3	TM-score=0.933 to 2idbA TM-score=0.966 to native SCOP code=b.45.1.3

Experimental Structure

Download 2idbA

SCOP code=b.45.1.3