Template-based Modeling Results for YAGF_ECOLI

Submitted Primary Sequence

>Length 655
MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPIALGYHTGHWEIGMQMQAAAKEITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARAVSELDSRGITTRDILSDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWTRINRKVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLEWWQASERRARFRQCLREQDGVEPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSVIKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGTGMEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDRLTLTGSVNFIGTADNPLTPEEGARELARRQTHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPIALGYHTGHWEIGMQMQAAAKEITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARAVSELDSRGITTRDILSDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWTRINRKVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLEWWQASERRARFRQCLREQDGVEPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSVIKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGTGMEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDRLTLTGSVNFIGTADNPLTPEEGARELARRQTHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHCCCCCCCCCEEEEECCCCCCCEEEEECCCCHHHCCCCCCEEEEEEEEEECCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEECHHHHCCCCEEEECCCCEEEEECCCCEEEEEECHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPIALGYHTGHWEIGMQMQAAAKEITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARAVSELDSRGITTRDILSDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWTRINRKVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLEWWQASERRARFRQCLREQDGVEPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSVIKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGTGMEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDRLTLTGSVNFIGTADNPLTPEEGARELARRQTHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
5533322234232110000212123121221231123121020000010000013223121210000001111211213210111010111011003000310241110000000010010102013001000000200010021002012021000000100310000000000112000000000012132123321302100110234312231021001300011000020100000010001001000120010111122012102201200020123102022000130010000000011001000000000013030201203102201420110010112032110001003000001001102311001220000112101200321322333241331133332132310001132022412210000010100220000100102221113321110202010021121003003333024100000002013011021002000002312212100000112012112000000000101330100102320002010320101000122112333222330121023233323232431223112001001200112231011103200300210242134
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLFGMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPIALGYHTGHWEIGMQMQAAAKEITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVATCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEAAELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARAVSELDSRGITTRDILSDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWTRINRKVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGENLEWWQASERRARFRQCLREQDGVEPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSVIKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGTGMEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDIIEIAVDRLTLTGSVNFIGTADNPLTPEEGARELARRQTHPDLHAHDFLPDDTRLWAALQSVSGGTWKGCIYDTDKIIEVINAGKKALGI
1	MUSTER	2gp4A	0.240	0.769	2.987	threading_1	--------------------------------------------------------------HHSVVQSVTDRII------ARSKASREAYLAALNDARNHLLKEVGSVAQVAGV--PCDGVTQGQPGE-LSLLSREVIAATAVGLS--H-NFDGALLLGICDKIVPGLLIGALS-FGHLPLFVPAGPG----------------------KVDRAQLLEAEAQSYHS-AGTC--TFYGQLL-----EVGLQLPGSSFVNPDDPLREALNKAAKQVCRELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH--ADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWV---DGPTVSLDTEVLTSVATPFQN--NGGLKLLKGNLG--RAVIKVSAVQPQH------RVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVS--------------DTELATRTATEIDLRHSRYGG-RELFGVLRSNLSSPETGARS-TSAIDELY---------
2	SPARKS	2gp4a	0.228	0.769	4.068	threading_2	--------------------------------------------------------------HHSVVQSVTDRIIA------RSKASREAYLAALNDARNHLLKQEGSVAQVAGVPC--DGVTQGQPGE-LSLLSREVIAATAVGL--SH-NFDGALLLGICDKIVPGLLIGAL-SFGHLPLFVPAGPG----------------------KVDRAQLLEAEAQSYHS-AGTC--TFYGQLLE-----VGLQLPGSSFVNPDDPLREALNAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNL-THIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH--ADINHFHAAGGA-FLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELR---WVDGPTVSLDTEVLTSVATPFQN--NGGLKLLKGNLG--RAVIKVSAVQPQHR------VVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRT--------------ATEIDLRHSRYGG-RELFGVLRSNLSSPETGARSTSA-IDELY---------
3	PROSPECT2	2gp4A	0.228	0.771	4.215	threading_3	-----------------------------------HHSVVQSVTDRIIARSKASREAYLA--------------------------ALNDARNHLLKQEVGSVAQVAGVP--------CDGVTQGQPGE-LSLLSREVIAATAVGL---SHNFDGALLLGICDKIVPGLLIG-ALSFGHLPLFVPAGP----------------------GKVDRAQLLEAEAQSYHSA--------GTCTFYGQLLEVGLQLPGSSFVNPDDPLREALNAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGHAD--INHFHAAGGAF-LIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE---LRWVDGPTVSLDTEVLTSVATPFQN--NGGLKLLKGNLGR--AVIKVSAVQPQHR------VVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVS--------------DTELATRTATEIDLRHSRYGGR-ELFGVLRSNLSSPETGARSTSAIDE----------LY
4	PPA-I	2gp4A	0.232	0.769	9.822	threading_4	--------------------------------------------------------------HHSVVQSVTDRII------ARSKASREAYLAALNDARNHLLQEVGSVAQVAGV--PCDGVTQGQPGE-LSLLSREVIAATAVGLSH---NFDGALLLGICDKIVPGLLIGALS-FGHLPLFVPAGPG----------------------KVDRAQLLEAEAQSYHS-AGTCT--FYGQLL-----EVGLQLPGSSFVNPDDPLREALNKAAKQVCRELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH--ADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWV---DGPTVSLDTEVLTSVATPFQN--NGGLKLLKGNLG--RAVIKVSAVQ------PQHRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTAT--------------EIDLRHSRYGG-RELFGVLRSNLSSPETGARST-SAIDELY---------
5	HHPRED-l	2gp4_A	0.266	0.753	9.728	threading_5	----------HSVVQSVTDRIIARSKRLAALNDARNH------------------------------------------------------------LLK---QEVGSVAQVAG-V--CDGVTQGQPG-ELSLLSREVIA-ATAVGLSHN--FDGALLLGICDKIVPGLLIG-ALSFHLP-LFVPAGP----------------------GKVDRAQLLEAEAQSYHSA-GTCTFYG--------LEV-GLQLPGSSFVNPDDPLREALNK-AAKQVCRLTEQYSPIGEVVNEKSIVNGIVALLATGGSTNLT-HIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH--ADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGE----LRWVDGTVSLDTEVLTSVA--TPFQNNGGLKLLKGNLGR--AVIKVSAVQPQ------HRVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANG-PELHKLTPLLGSQDKGFKVAL-TDGR-SGASGKPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVS--------------DTELATRTATEIDLRHSRYG-GRELFGVLRSNLSSPETGARSTSA-IDELY---------
6	HHPRED-g	2gp4_A	0.261	0.744	3.945	threading_6	---HSVRSKASREAYLAALNDARNH------------------------------------------------------------------------LLK---QEVGSVAQVAG-V--CDGVTQGQPG-ELSLLSREVIA-ATAVGLSH-N-FDGALLLGICDKIVPGLLIG-ALSFHLP-LFVPAGP----------------------GKVDRAQLLEAEAQSYHS-AGTCTFYG--------LEV-GLQLPGSSFVNPDDPLREALNK-AAKQVCRLTEQYSPIGEVVNEKSIVNGIVALLATGGSTNLT-HIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH-AD-INHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLD----GELRWVDPTVSLDTEVLTSVATPFQNN--GGLKLLKGNLGR--AVIKVSAVQPQHR------VVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANG-PELHKLTPLLGSQDKGFKVAL-TDGR-SGASGKVAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRTA-------------TEIDLRHSRYGRELFGVLRSNL---SSPETGARST-SAIDELY---------
7	SP3	2gp4a	0.233	0.768	1.603	threading_7	--------------------------------------------------------------HHSVVQSVTDRI------IARSKASREAYLAALNDARNHLLKEVGSVAQVAGVP--CDGVTQGQPGE-LSLLSREVIAATAVGL--SH-NFDGALLLGICDKIVPGLLIGAL-SFGHLPLFVPAGPG----------------------KVDRAQLLEAEAQSYHS-AGTC--TFYGQLLE-----VGLQLPGSSFVNPDDPLREALNAKQVCRLTELGTQYSPIGEVVNEKSIVNGIVALLATGGSTNL-THIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH--ADINHFHAAGGA-FLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGEL----RWDGPTVSLDTEVLTSVATPFQN--NGGLKLLKGNLG--RAVIKVSAVQPQHR------VVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKGPELHKLTPLLGSLQDKGFK---VALTDGRSGASGKVPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLVSDTELATRT--------------ATEIDLRHSRYGG-RELFGVLRSNLSSPETGARSTSA-IDELY---------
8	SAM-T99	2gp4A	0.255	0.748	8.534	threading_8	------------------------------QSVTDRIIARSKASREAYLAALNDARNHLLKQEVG------------------------------------SVAQVAGVP--------CDGVTQGQPGEL-SLLSREVIAAT--AVGL-SHNFDGALLLGICDKIVPGLLIGAL-SFGHLPLFVPAGP----------------------GKVDRAQLLEAEAQSYHS-AGTCTFYG------QLLEV-GLQLPGSSFVNPDDPLREAL-NKAAKQVCRLTELGTQYSEVVNEKSIVNGIVALLATGGSTNLT-HIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGHA--DINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPK---LLDGELRWVDGPTVSLDTEVLTSVATPF--QNNGGLKLLKGNLGR--AVIKVSAVQPQH------RVVEAPAVVIDDQNKLDALFKSGALDRDCVVVVKGQGPKANG-PELHKLTPLLGSLQDKGFKVALTDGR-SGASGKPAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLV----------SDTELATRTATEIDLRHSR-----YGGRELFGVLRSNLSSPETGA--------------------
9	MUSTER	2gp4A1	0.225	0.528	1.730	threading_9	--------------------------------------------------------------HHSVVQSVTDRI------IARSKASREAYLAALNDARNHLLKEVGSVAQVAGVP--CDGVTQGQPGE-LSLLSREVIAATAVGLS--H-NFDGALLLGICDKIVPGLLIGALS-FGHLPLFVPAGPG----------------------KVDRAQLLEAEAQSYHS-AGTC--TFYGQLL-----EVGLQLPGSSFVNPDDPLREALNKAAKQVCRELGTQYSPIGEVVNEKSIVNGIVALLATGGSTN-LTHIVAAARAAGIIV-NWDDFSELSDAVPLLARVYPNGH--ADINHFHAAGG-AFLIKELLDAGLLHEDVNTVAGYGLRRYTQEPKLLDGELRWV---DGPTVSLDTEVLTSVATPFQN--NGDLGVLRSNLSSPETGARSTSAIDELY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	2p1mb	0.090	0.811	0.669	threading_10	--------P-EEVLEHVFSFIQLDKNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRPKVSVELKGKPHFADFNLVPDGW----GGYVYPWIEAMSSSYTWLEEIRLKRMVVT----------------------DDCLELIAKSFKNFK-VLVLSSCEGFSTDGLAAIAATCNLKELDLRESDVDDVHFPDTYTSLVSLNISCLASEVSFSALERLVTR-CPNKSLKLNRAVPLEKLATLLQRAPLGTGGYTAE--VRPDVYSGLSVALSGCKELRCWDAVPAYLPAVYSVCSRLTLNLSATVQSYDLVKLLCQCPKLQRDYIEDAGLEVLASTCKDLLRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR--LS-LSGLLTDKVFE-----YIGTYAKKMEMLSVAFA----GDSDLGMHHVLSGSLRK---LEIRDCPFGDKALLANASKLETMRSLWMS-------------SCS------VSFGACK----LLGQK-------MPK--LNVEVDERGAPDSRPESCPVERVFIYRTVAGPRFDPGFVWNM--------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.847 to 2gp4A SCOP code=c.8.2.2	TM-score=0.851 to 2gp4A SCOP code=c.8.2.2	TM-score=0.842 to 2gp4A SCOP code=c.8.2.2	TM-score=0.848 to 2gp4A SCOP code=c.8.2.2	TM-score=0.848 to 2gp4A SCOP code=c.8.2.2