Template-based Modeling Results for YAGM_ECOLI

Submitted Primary Sequence

>Length 284
MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
CCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCEEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHCEEEECCCCCCCEECCCCCCCEEEEEEEEEEECCEEEECCCEEEEEHHHHHHHCCCCHHHHCCCCCCEEEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
55332120100100213321313333230012110210101032322110012003214321110011002100100220110110022013101312133222334142312032000200112022313110021032313232103322100233123232312021000012223121303212110100000201022000000100000022002110330133322222010000010000221000000013232234230332000222233395
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKNQSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKESINRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLSSLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQLIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIINPYSQESRT
1	PROSPECT2	1ezvb	0.088	0.923	1.322	threading_1	DAPTKISTLAVKVHGGSRYATKDGGTFKSTLDREYITLKATFLKDYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLLYDGVERVSLQDIKDFADKVYTKENLEVS-----------GENVVEADLKRFVDESLLSTLP------AGKSLVSKSEPKFFLGEENRVRFIGDSVAAIGIPVNKASLAQYEVLANYLTSALSELSGLISSAKLD-----KFTDGGLFTLFVRDQDSIELNFDAVKDFKLGKFPYLDEL
2	HHPRED-g	3ebk_A	0.231	0.229	1.201	threading_2	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NEDCF--RHESLVPNLDIIAAGTSEALT--------QYKCWIDRFSYDDALVS--KY--TDS----QGKNRTTIRDYNDKGKA
3	PROSPECT2	1utea	0.059	0.901	1.204	threading_3	PTPILRFVAVGDWGGVPNAPFHTAREMA------------------NAKAIATTVKTHDAKDKRFQETFEDVFSDPSLRNNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLVAGHYPVWSIAEHGPTKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGGFAYVEITPKEMSVTYIEASGK----------SLFKTKLPRRA
4	PROSPECT2	1nijA	0.070	0.852	1.088	threading_4	EQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLGMADPGPIIQTFFSHEVLCQRADEQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLHERLARINPVYTVTHGDIDLGLLFNTNGFMLEENVVS------------------------TKPRFHFIADKQNDISSIVVELDYPVD--------------ISEVSRVMENLLLESADK----LLRYKGMLWIDGELLFQGVQRLYSADWDRPWGDEFIGIQLPAGLRK
5	PROSPECT2	1i8ta	0.094	0.894	1.079	threading_5	GAHIFHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNGVKDPQEAQNIINAQKKKEEQAISLVGEDLYQALIKGYTEKQWGRSAKELPAFIIKRIPVRFTFDNNYFSDRYQYTKLIEKML--------------EGVDVKLGIDFLKDKDSLASKA-------HRIIYTGPIDQYFDYRFGALEYRSLKFETERHEFPNFQGNAVINFTDANVPYTRIIEHKHFDYVETKHTVVTKEYPLEWKVG---------DEPYYPVNDEDKVIFGGRLAEYTD
6	PROSPECT2	3ii6X	0.069	0.813	1.076	threading_6	KISNIFEDVEFCVMSGTQPKPDLENRIAYIVQNPGPDTYCVIAGSENIR-VKNIILSNKHDKPAWLLECFKTKSFVPWQPRFMIHMCPSTKEHFAREYDCYGDSYFIDTD----LNQLKEVFSG-------------IKNSNEQTPEEMASLIADLEYRYSWDCSPLS------------------MFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHG-----------------AKVVSCLAEGVSHVIIGEDHSRVARTFKRKFKILKEIDKCELQ
7	MUSTER	3o8yA	0.141	0.926	0.600	threading_7	ERGAVDSYDVTVDEEGEKRKYGSNDDKYITLKTP-DYIEFPCYGDVEVVLRDGRAKLARDDQIHILKQHRRKELETRQKQYRWMEWNPGF-PLSIDAKCHKDLPRDDSEKGVDFVLNYSKAMENLFINRF----MHMFQSSWND-----ADFEKIFVKISNTISERVMNHW---QEDLMFGY--QFLNGANPVLIRRCTELPEKLPVTTEMV-LSLEQEVQQGLDGIDANKTDPCTLQFLAAICLLYKNLANKIVPIAIQLNQIPG---DENPIFLP-SDAKYD
8	SPARKS	1daaa	0.107	0.919	0.562	threading_8	WNDQIVKDEEVKIDKE---DRGYQFGDGVYEVVKVYNGEM-FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEK-NELNTGHIYFQVTRGTSPRAHQFPENTVKPVITKENPRLENLEKGVKATFVEDI---RWLRCDIKSLNLLGAVLAKQEAHEKGC----YEAILHRNNTVTE------GSSSNVFGIK----DGILYPANNMILITRDVVIACANENMPVKEIPFTTHEALKMDELFVTSTTSEITPVIEIDGKLIRDGKVGEWTQKQFETKIP-
9	PROSPECT2	2nxfA	0.066	0.849	1.075	threading_9	DPVFTFGLIADVQYADIEDGENYLRTR-------------RRYYRGSADLLRDAVLQRRDASDRALDTVDACSVDVHHVWGNHEFYNFSRPSLLSSRLNSAQGSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHVLCFIAGHDHDGGRCTDSSGAQHITLEGVIETPP-----------------------HSHAFATAYLYEDRVKGRGRVED-------LTITYS
10	PPA-I	2p9bA1	0.054	0.782	0.691	threading_10	LRNTGADGRIEQVAPSIETSIPAE--YHYLDGTGINAHTHLFSYAATVKHNATTLLESGVTTIRTLGDVGYEVVTLRDQIDAGQILGPRI--LASGPLAIPEGHGAPLIALTSGTPEEARTAVAQNLKAGVNAIGVGTDTGTFVPQYATWRELELLVAYAGFSPAEALHAATAVVDAETGSLNANPLDDLRALEHPALVIAAGHPVWRPGPKRFADIDALLDEAYA----------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.592 to 1kb9B SCOP code=d.185.1.1	TM-score=0.270 to 2retA SCOP code=d.24.1.7	TM-score=0.607 to 3d03A SCOP code=d.159.1.11	TM-score=0.667 to 1nijA SCOP code=c.37.1.10	TM-score=0.652 to 1i8tA SCOP code=c.4.1.3