Template-based Modeling Results for YBIC_ECOLI

Submitted Primary Sequence

>Length 361
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGMPEETLQAFCQQLAS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGMPEETLQAFCQQLAS
CCCCEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGMPEETLQAFCQQLAS
5542220213101200110043020333103100100000211112110000011002112313122322020123110000010220001000110011002103412000000100100020010010002210000000011111100113132221000000000014432100000000000001021023222301200001332121210210131121011212302000000000000000011211232223222321210000000003001132012102200210321323432200011122121222135320301210021012004402033310220023135
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAGHDSHGIGMIPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGMPEETLQAFCQQLAS
1	MUSTER	1z2iA	0.280	0.958	2.998	threading_1	---TVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCN--SDSFVRLHDGAMRFHGTNPIAVGVPAADDMPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDPNAV--EMLAPVGGEFGFKGAALAGVVEIFSAVLTGMRLSFDLAPMGGPDFRGLGAFVLALKPEAFLEDVFDESMKRYLEVLRGSPAREDCKVMAPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSPPTYH--------
2	SPARKS	1z2ia	0.280	0.958	6.061	threading_2	---TVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCN--SDSFVRLHDGAMRFHGTNPIAVGVPAADDMPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDPNAV--EMLAPVGGEFGFKGAALAGVVEIFSAVLTGMRLSFDLAPMGGPDFRGLGAFVLALKPEAFLEDVFDESMKRYLEVLRGSPAREDCKVMAPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSPPTYH--------
3	PROSPECT2	1z2iA	0.283	0.950	4.707	threading_3	---TVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCN--SDSFVRLHDGAMRFHGTNPIAVGVPAADDMPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDP-----NAVEMLAPVGGFKGAALAGVVEIFSAVLTGMRLSFDLAPMGGPDFSTPGAFVLALKPEAFLEDVFDESMKRYLEVLRGSPAREDCKVMAPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSPPTY--------H
4	PPA-I	1z2iA	0.280	0.958	4.478	threading_4	---TVLARLDELERFCRAVFLAVGTDEETADAATRAMMHGTRLGVDSHGVRLLAHYVTALEGGRLNRRPQISRVSGFGAVETIDADHAHGARATYAAMENAMALAEKFGIGAVAIRNSSHFGPAGAYALEAARQGYIGLAFCN--SDSFVRLHDGAMRFHGTNPIAVGVPAADDMPWLLDMATSAVPYNRVLLYRSLGQQLPQGVASDGDGVDTRDPNAV--EMLAPVGGEFGFKGAALAGVVEIFSAVLTGMRLSFDLAPMGGPDFRGLGAFVLALKPEAFLEDVFDESMKRYLEVLRGSPAREDCKVMAPGDREWAVAAKREREGAPVDPVTRAAFSELAEKFSVSPPTYH--------
5	HHPRED-l	2g8y_A	0.997	0.970	5.021	threading_5	--SGHRFDAQTLHSFIQAVFRQ-GSEEQEAKLVADHLIAANLAGHDSHGIG-FPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEA-ALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIP-VAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAV-QESPLGSLLTFAEHKGYALAA-CEILGGALSGGKTTHQETLQTSPDAILNC-TTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIG-PEETLQAFCQQLA-
6	HHPRED-g	2g8y_A	0.997	0.972	4.036	threading_6	--SGHRFDAQTLHSFIQAVFRQ-GSEEQEAKLVADHLIAANLAGHDSHGIG-FPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEA-ALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIP-VAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAV-QESPLGSLLTFAEHKGYALAA-CEILGGALSGGKTTHQETLQTSPDAILNC-TTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIG-PEETLQAFCQQLAS
7	SP3	2g8ya	0.960	0.972	6.102	threading_7	--SGHRFDAQTLHSFIQAVFR-QGSEEQEAKLVADHLIAANLAGHDSHGI-GFPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAA-LGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIP-VAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVQE-SPLGSLLTFAEHKGYALA-ACEILGGALSGGKTTHQETLQTSP-DAILNCTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGP-EETLQAFCQQLAS
8	SAM-T99	1x0aA	0.312	0.931	4.965	threading_8	----MRWRADFLSAWAEALLRKAGADEPSAKAVAWALVEADLRGVGSHGLLRLPVYVRRLEAGLVNPSPTLP-LEERGPVALLDGEHGFGPRVALKAVEAAQSLARRHGLGAVGVRRSTHFGMAGLYAEKLAREGFVAWVTTNAE--PDVVPFGGREKALGTNPLAFAAPAPQG-ILVADLATSESAMGKVFLAREKGERIPPSWGVDREGSPTDDPHRV-----YALRPLGGPKGYALALLVEVLSGVLTGAGVAHGIGRMYDDRPQDVGHFLLALDPGRFVGKEFLERMGALWQALKATPPAPGEEVFLPGELEARRRERALAEGMALPERVVAELKALGERYGVPW------------
9	MUSTER	2g8yA	0.943	0.972	2.993	threading_9	--SGHRFDAQTLHSFIQAVFRQ-GSEEQEAKLVADHLIAANLAGHDSHGI-GFPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAF-GQVAAHEAALGIEKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVG-IPVAPFHGRDSRFGTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPAVQE-SPLGSLLTFAEHKGYALAA-CEILGGALSGGKTTHQETLQTSP-DAILNCTTIIINPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGSWQAICDAARQIGP-EETLQAFCQQLAS
10	SPARKS	3i0pa	0.262	0.961	5.934	threading_10	--QTKNVSIDTIKEFMYQVLLKVGSDEENARMVRDTLIAADLRGMDTHGIQRFKVYIDRIKKGMINPTAKPSIIRETSTTCVLDGNNGFGHVNGTIGMKMAIEKAKKYGMGMVVVRNSTHFGIAGYYSLLAAQEGCIGICGTN--ARSSVAATFGDEPILGTNPLAIGIPSDEAFPYCFDGATSISPTGRFEKYVRMGKTVDKSWASMKGGKPIEDPKELLENYPGSDEVSGSHKGYCLSEFVEIMSSCLSIANFLNHIEEEKESGKFSLGHFFIAINVECFRDNEFKKNVGDINRTLRNTDLPGHDRIYTAGEKEYETEQKRRKFGDDLPLVTINEMKELSSFYNVPLPF----------

Predicted Tertiary Structure


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TM-score=0.888 to 1xrhC TM-score=0.893 to native SCOP code=c.122.1.1	TM-score=0.881 to 1xrhC TM-score=0.885 to native SCOP code=c.122.1.1	TM-score=0.888 to 1xrhC TM-score=0.893 to native SCOP code=c.122.1.1	TM-score=0.879 to 1xrhC TM-score=0.896 to native SCOP code=c.122.1.1	TM-score=0.888 to 1xrhC TM-score=0.893 to native SCOP code=c.122.1.1

Experimental Structure

Download 2g8yA

SCOP code=c.122.1.1