Template-based Modeling Results for YBIP_ECOLI

Submitted Primary Sequence

>Length 527
MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCEEECCEECCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP
54232220110101000000000000000000000110000000000000000020012001000000000000000000010001110010012111310120011000000000000000000002123312311010000000000000000100211010001111210110020021001012201321230130112332222222333220000000110111011012132320220221300002100011111120010111212323231231011003302010000012131231110010002102211123313122332020210020012002333332100000010111211220323222223222110011001000200320022024223200000001102113331220221123222222010000000033323321424200100000002001031331223111023332221200213233031331223224335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTAAFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEESTEILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQNLAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQTYVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVDGKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADKNTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLYTMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVPFMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNFQLQKVDYNHLGTDIFDPKP
1	MUSTER	3lxqA	0.136	0.626	1.104	threading_1	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SAEQFYGKDNQKLDLVRASSTKIDFDPTLLPTTYQGKRKNLVILLQESLGAQFVGSLGGL-PLTPNLDE-EGWQFTQYAT-GTRSVRGIEAVTTVKLSKSQTGFFTIADLLKEQGYHTQFIYGEANFDNKTFFFGNGFDQIVEEKNYTNPGFVGSWGVSDEDLYNKADEEFERKGDKPFFSLVFTSSNHSPY--EYPE--GKIEQYDSEHTRNNAVKYSDYALGTFFDKAKKSSDDTIFIVIADHDARVF---------GANLVPVKHFHIPALIIGK-DIQPRKDDRIANNID-PPTLLSLIGVDAKTP-IGRDLTKPLAREDVVLSPGEKVSTEYDESQTKPLEVDE
2	PROSPECT2	1w63A	0.090	0.924	1.765	threading_2	MPRTQAEEREMIQKECAAIRSSFNVAKLLYMHMLGYPAHFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLMT--------NCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISD-----------PFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNLTIMDIKSESGLRVLAINILGRFLLN-----NDKNIRYVALTSLLKTVQTDHNADCLKDLDVSVNGNNIRGMMKELLYFLAAEKYAPSKRWHI-------DTIMRVLTTAGSYVRDDAVPNLIQLITNHAYTVQRLYKAILGDYSQQPLVQIGEYGDLLVSGQCEEEEPIQVTEDEVLDIL-------ESVLISNMSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVSIYGSSIDVLFKKYDHMR--SALLERMPVMEK
3	PROSPECT2	1qsaa	0.072	0.918	1.700	threading_3	DSLDEQRSRYAQIKQAWPYLEYRQITDFVNELARREDWRGLLAFQCNYYYAKWNTGQSEEAWQGAKELWLACDKLFSVWRASGKQDPLAYLERIRGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTS---------LIERRVRMALGTGDRRGLNTWLAR-----------------------LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNL-----------DNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPPKVKSPVGASGLMQIIPGYSSPGQLLDPETNINIGTSYLQYVYQQFGNNRRTWLGNSAGRIDAVAFVESIPFSGDKPTLMSATEWGRRY
4	SPARKS	2w8da	0.119	0.636	2.724	threading_4	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSSDVTEVENYKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLHDNETFYFDNFFHQTGQGKSDAEFENSLYPNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEYKAEGIDKFFDSAYYDNEENTKNYGKDKPFFKESPL--LESLPQPFYTKFITLSNHFPFGDEGDTDFPAGFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGDKSIIVYGDHYGIS-ENHNKAAKVLGKDEITDYDNRVPLFIH-AAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKT
5	PROSPECT2	1qgra	0.086	0.968	1.693	threading_5	MELILERAAVENLPTFLVELSARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDPFIKEHIKNLLPEAAINDVYLAPLLQCLIEGLSAEPRVASNSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNSAKDCYPQKTTLVIMERLQQVLQME-------SHIQSTVLRKVQHQDALQISDVVMASLLRMLKYMEAFKPFLGIGLKNYAEYQVCLNLGNENVHRSNTLQQASQAQVDKSDYDMVDVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTGKDVLKLVEARPMIHELL----------TEGRRSKTNNQA
6	PPA-I	2w8dB	0.113	0.639	1.474	threading_6	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ADSSDVTEVENYKANYDVPNNVYFGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLNDNETFYFDNFFHQTGQGKSDAEFENSLYPNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWNRNEYKAEGIDKFFDSAYYDNEENTKNYGKDKPFFKESPLL--ESLPQPFYTKFITLSNHFPFGDEGDTDFPAGDFGDVVDNYFQSAHYLDQSIEQFFNDLKKDGDKSIIVYGDHYGISENHNKAAKVLGKDEITDAQLQRVPLFIHA-AGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKT
7	HHPRED-l	2vqr_A	0.128	0.579	4.325	threading_7	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKNVLLIVVDQWRADFVPHVLRDFLKTPNLDRLEGVTFRNHVTTCVP-GPARASLLTGLYLMNHRRHLNLGKALRGVGYDPALIGYTTTVPGFHPVGAFEPNMEGYFGWVAQNGFIPKEFSDSTFFTERALTYLKGRDGKPFFLHLGYYRPHPPFVASAP-YHAMYELRQMRATYCGLITEVDDCLGRVFSYLDETGDDTLIIFTSDHGEQLGDHHL----LGKIGYNDPSFRIPLVIKDAGENAGAIESGFTESIDVMPTILDWLGGKIPHACDGLSLLPGRPQDRTEIQDERYKYVHFADLRHDPNEFT-
8	HHPRED-g	2vqr_A	0.143	0.583	3.772	threading_8	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KKNV-LLIVVDQWRADFVPHVLRDFLKTPNLDRLEGVTFRNHVTTCVP-GPARASLLTGLYLMLDQRHLNLGKALRGVGYDPALIGYTTTVPGFHPVGAFEPEGYAQNGFLPEGEDAVKEFSDSTFFTERALTYLKGRDGKPFFLHLGYYRPHPFYHAMYRPEDMSFFQAEMRATYCGLITEVDDCLGRVFSYLDETGDDTLIIFTSDHGEQLGDHHLLGKIGYN----DPSFRIPLVIKDAGENAGAIESGFTESIDVMPTILDWLGGKIPHACDGLSLLPFLSEGRPQDERYKYVHFAFFDLRHDPNEFTN
9	SP3	2w8da	0.121	0.628	2.101	threading_9	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSSDVTEVENYKANYDVPNGKAEGKNVIYVSLESLQSFIIDYKIDGKEVTPFLHDNETFYFDNFFHQTGQGKSDAEFENSLYPNKAQNTLQSVPAILKSKNYTSATFGNTQTFWNRNEYKAEGIDKFFDSAYYDNEEN-TKNYGKDKPFFKESPL--LESLPQPFYTKFITLSNHFPFGDEGDTDFPAGFGDSVVDNYFQSAHYLDQSIEQFFNDLKKDGDKSIIVYGDHYGISHNKAAKVLGKDEITDYDNAQQRVPLFIH-AAGVKGEKVHKYAGDVDVAPTILHLLGVDTKDYLSGSDILSKEHREVIPFRNGDFISPKYTKISGKYYDTKT
10	SAM-T99	3lxqA	0.142	0.535	1.876	threading_10	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NQKLDLVRASSTKIDFDPTLLPPATYQGKRKNLVILLQESLGAQFVGSLG-GLPLTPNLDELEGWQFTQ-YATGTRSVRGIEAVTTGFPPSPSRGFFTIADLLKEQGYHTQFIY--GGEANFDNKTFFFGNIVEEKNYTN-PGFVGSWGVSDEDLYNKADEEFERLSKGDKFSLVFTSSNHSPYEY----------PEGKIEQYDNAVKYSDYALGTFFDKAKKYWDDTIFIVIADHDARV-------FG--ANLVPVKHFHIPALIIGKDIQPRKDIDPP--------TLLSLIGVDAKGRDLTKPLAREDER---------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.549 to 1o98A SCOP code=c.105.1.1	TM-score=0.788 to 1w63C SCOP code=i.23.1.1	TM-score=0.546 to 1o98A SCOP code=c.105.1.1	TM-score=0.726 to 1slyA SCOP code=a.118.5.1	TM-score=0.859 to 1b3uA SCOP code=a.118.1.2