Template-based Modeling Results for YCBB_ECOLI

Submitted Primary Sequence

>Length 615
MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCHHHHHCCCCCCCCEEEEECHHCEEEEEECCEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCHHHHHHCCEEEEECCCCCEECCCCCCCHHHHCCCCCCEEEECCCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCEEEEEEEEEEECCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR
553322212000000000000001002132322321212122122322321232322222222322231002202120233132223321121012001212120012233003200200120132202220130021122222321111000010000001101213231231112232222222222002201201331212100210123123111002101000121331230223222321322321210120022101132123221223323232222222112322313211210222232222232101330120032013223021201002101211212222100100110210201223122000010120100002321200202000132424012110101000111212002100122001203311210232101002023222211223111110122312010222312411102000101122000001011321132322110110010220210010003222233310121133222210204430100000000001331200012101111220110021023023225
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAVSEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARDMQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGYLHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYAAMHESLLALLCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGDDTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGLGADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNGNQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESHGYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYLHDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNIRQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR
1	PROSPECT2	1w36B1	0.098	0.842	1.882	threading_1	MSDVAETLDPLFTIAALYLRLLLGLGGSAAFPRPLTVHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQDESLLRYQACADFWRRHCYPLPREIAQVVFETWKG--------------PQALLRDINRYLQGE-----APVIKAPPPDIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALR---------------------SESGEVLAAAIRTRFP------------------VAMIDEFQDTDPQQYRIFRRIWHHQPETYAFRGADIFTYMKARSEVHAHYTLDTNWRSAPGMVNSV--------NKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGDY---------------QSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARP------VRASALTLLEIPSVYLSNRDRLESDLVQIVTIHKSKGLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTR----------SVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLGLRTCIEALCD
2	HHPRED-l	3bkh_A	0.141	0.403	7.279	threading_2	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHH------------------HHGSI-KVLRKGDRGDEVCQLQTLLNLCGYDVG--------------------------------------------KPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPPIPYKTIP-PTANKSRAAATV-NAVENATGVRSQLLLTFASIAFDYEIKAKTSSATGWFQFLTGTWKT-IENYG-KYGLTDPTGALRKDPRISAL-GAELIKEPVLKREPTDTDLYLA------------HFFGPGAARRFLTTGQNELAAFPKEAQANPSIFNKDGSPKTIQEVYNL-DGKVAAHR----K---------------------------------------------------------------------
3	HHPRED-g	3bkh_A	0.146	0.411	7.508	threading_3	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHH-------------HHG-----SI-KVLRKGDRGDEVCQLQTLLNLCGYDVG--------------------------------------------KPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAELFSKYSPPIPYKTIP-PTANKSRAAATV-NAVENATGVRSQLLLTFASIESAYEIKAKTSSATGWFQFLTGTWKT-IENYG-KYGLTDPTGALRKDPRISAL-GAELIKE--N-NILRPVLKREP--TDTD-LY-LAHFFGPGAARRFLTTGQNAATHFPKEAQANPSIFNKDGSPKTIQEVYNL-DGKVAA----HRK---------------------------------------------------------------------
4	SAM-T99	3bkhA	0.284	0.109	1.937	threading_4	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLRKGDRGDEVCQLQTLLNLCGYDVG--------------------------------------------KPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAEL------------------------------------------------------------------------------------------------------------------------------------------------------------------------FSKY-----------------------------------------------------------------------------------------------
5	PROSPECT2	3a0oA	0.067	0.948	1.754	threading_5	LDEPRPGSLTIGYFTDKKTLVFEDLAWNFFTPDEALPDSEALPKTPLPGRSARHAAAQTSHPRLWLNSEQLSAFADAVAKDPNHCGWAEFYEKSVEPWLERPVMPEPQPQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDDHVIAHARIHVFPYDSHAVRSLSAV-----LTPACIALQGESDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPGMAYLIEAANLIRSYIGYDLYQRPFKAPGTRRANFGDDSTLGDLPGLKLGYNVRQFAGVTG----------NGHYQWYFDHIKADATGTEMA-------FYNYGWWDLNFDDLVYRHDYPQVEAVSLPALAVFDDIGWATIQKEDPDRHLQFVFKSSPYGSLSHSHGDQNEDLAIQSGYYVAFN------SQMHLNWRRQTRSKNAVLI----GGKGQYAEKDKALARRAAGRIVSVEEQPVANPLVQKVETHFVNDSYFLCHTLGAPQTGRSSFRYNGRKAFVYSSGGTPQISAVEGFPDIDPKEFEGLDIHHHVCATVPAATRHRLVTVPYSLKEPKRIFSFIDDQGFSTDIYFSDVDDERFKSLPK
6	HHPRED-l	1zat_A	0.179	0.380	3.311	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------------KEQ-LASMNAIANVKAT---YSINGETF--QI-PSSDIMSWLTY-NDGKVRQYVTDLGTK---Y-------NTS-TNDTKFK-STKRGEVPVGTYSWTIDSE--------------------------------------------------------------TEALKKAILAGQ---DFTRSPIVQ----------------------GGTTADHPLIETYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTN-------------------------------G--------------------------TPYESPVNYWMPI-DWTGVGIHDSDWQPEYGGDKTRGSHGCINTPPS--VMKELFG-----------MVEKGT----------PVLVF----------------------------------------
7	HHPRED-g	1zat_A	0.157	0.384	2.899	threading_7	---------------------------------------------------------------------------------------------------------------------------------------------------------KEQLASMNAIA-NVKAT---YSINGETFQ--IPSSD-IMSWLT----------------------------------------Y------NDGKVDLDTEQVRQYVTDLGT--KYNT------------S------TN-------DTKFKSTKRGEVTVPVGTTDEALKKAILAGQ---DFTRSPIVQGG----------------------TTADHPLIETYIEVDLENQHMWYYKDGKVALETDIVSGKPTTPTPAGVFYVWNKEEDATLKGTN---------------------------GTPYESP---------------VNY----------------WMPIDWTGVGIHDSDWQPEYGGDLTRGSHGCINTPPS--VMKELFGMV-----------EKG----------TPVLVF----------------------------------------
8	SAM-T99	3bkhA1	0.271	0.114	1.919	threading_8	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VLRKGDRGDEVCQLQTLLNLCGYDVG--------------------------------------------KPDGIFGNNTFNQVVKFQKDNCLDSDGIVGKNTWAEL---------------------------------------------------------------------------------------------------------------FSKYSPP-----------------------------------------------------------------------------------------------------------------------------------------------------
9	PROSPECT2	1w36B	0.079	0.930	1.663	threading_9	MSDVAETLDPLFTIAALYLRLL-------------LGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEE--------IDDKAQAAQWLLLAERQMDEAAVFNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETW------KGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEETNSYQLP----ESLEKPRHPLFEAIDQLLAEPLSIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRDPQQYRIFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESRGEALLMNGDDARPVRLLEIPDEHAWDVVVEEFDGYRQIWRKRGVQHILEPDSNASSQQMRLESDKHLGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTCIEALCDDDIA------------WQTAQTGDNQPWQVNDGGFESQWEPVLTEWITSQLSAR
10	HHPRED-l	1y7m_A	0.193	0.262	2.621	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LTYQVKQGDTLNSIA---ADF---R-ISTA---ALL-------------------------------------------------------QANPSLQAGLTAGQS---IVIPG--------------LPDPYTIPYHIAVSIGAKTLTLSLNNRV-KTYPIAVGKILTQTPTGEFYIINRQ------------------------------------------------------------------RNPGGPFGAYWLSLS-AAHYGIHGTNNPASIGK---AVSKGCIR-HNK-D-VIELA-----------SIVPNGTR----------VTINR---------------------------------------

Predicted Tertiary Structure


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TM-score=0.603 to 1n7qA SCOP code=a.102.3.2	TM-score=0.580 to 1w36E SCOP code=c.37.1.19	TM-score=0.453 to 1slyA SCOP code=a.118.5.1	TM-score=0.467 to 1slyA SCOP code=a.118.5.1	TM-score=0.424 to 1su3B SCOP code=a.20.1.2