Template-based Modeling Results for YCCM_ECOLI


  Submitted Primary Sequence

>Length 357
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHCCCCCEEEECCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
553344332332112221411112111000011000000000000000000000111211100001121100200000000100110011011200000000000000000001410000000000000100010022122332212321312120010000000000000000100101111111000001001001100000000000000000001000021101100000112122212021223201201301310113020342231422000000000310222100112233222323221120100000000000000000110011312022200210022122234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNIYIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAMLLLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYLLLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFIRHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTVECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAGVWQSPVPEELYRRLIPQAPMIGH
1SPARKS1xer_0.2970.2071.071threading_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GIDPYGPVEPPVLGIHGTIVGVDFDLCIADGSCINACPVNTPGHPASEVNEQACIFCMACVNVCPVAA---IDVKPP--------------------------------------------------------
2PROSPECT23a0oA30.0660.8431.600threading_2VEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRDLLDASRK--------------------------WLLAVAAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTRIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLATLYSPWAPHYWMTGMAYLIEAANLIRSYIGYDLYQR--------PFFQNTGRFPLYTKAPGTRR--------ANFGDDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMAFYNYGW--WDLNFDDLVYRHDYPQVEAVSPADL------------P
3HHPRED-l1hfe_L0.1650.3731.923threading_3--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SR-------------------------TVM--ERIEYDPKAD-----PD--KLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHIEACINCGQCLTHCPE-NAIYEAQKDGKVKCIAMPAPAVRYALGTTGKMLAALQKLGFAHCWDTEFTADFVERLTKKLPQFT-
4HHPRED-g1hfe_L0.1760.3331.900threading_4--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SRTVMERVQIDEAKCIGCDTCSQYCPTA-AIEMGEPPHIEACINCGQCLTHCPE-NAIYEASWKKLKGKVKCMPAPAVTGKMLAALQKLGEFTADVTKKSDMPLPETYYPELLPHFSTCKS
5PROSPECT21uroa0.0780.8961.524threading_5GFPEWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSDILVVPQGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVE---GGGSSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIF-----------------AKDGHFALEEAQAGYEVVGLDWTVAPK-----KARECVGKTVTLQGNL------------DPCALYASEEEIGQLVKQMLDDFGPHYPDMDPEHVGAFVDASRLLRQ
6SAM-T993bk7A0.2240.2381.907threading_6---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVRKMRIAIDYDKCNKCGLCERVCPVNIIIDEEPIIQEASCTGCGICVHKCPF-NAISIVNLPEQLEDCVHEPGRHGRALPPMGMR----------------------------------
7HHPRED-l2c42_A0.1520.9411.921threading_7VNFRAKSMNPEHPHVRGTAQPANPYYLK--VPGIVAEYMQKVASLTGSSCETVINHLAAKGEKVRLYRPFVSEAALPAGDPLYVCSAFERGEAPEFSPAMVKSVYDNMS-G-AKKNHFTADTTPKGTITVGANKQAIKIIGEKIQSPAYVGIDMKHLPSGIKRTIANKFYNIDAVKIATDLGGRINMIMQTAIHKAYGKEKIVKMNTDAVDQAVTSLYPDSWKDVVKPLGT--SQFEKRAINVPQWVPENCIQCNQCAFVCPHSAILEEGIQINTLDCMGCGNCADICPPEKALVMQPLDTQRDA---QVPNLEYAARI-------P----VKSEVLPRDSLTPYVRVITQLRMFT-
8HHPRED-g1jb0_C0.2320.1931.899threading_8------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AHTV-KIYDTCIGCTQCVRACPTDV-LEIASSPRTEDCVGCKRCETACPT-DFLSIRVYLGAETT-----RSMGLAY----------------------------------------
9PROSPECT21j93a0.0870.8681.501threading_9TQPLRGKEVERPPRQAGRYMKSYQLLCEENVDLVVEISLQPWKVFGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEK---VREFIPEKSVPYVGEALTILRKEVNNQVLGFVGAPFTLASYVVE------GGSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLIL----------------------YASGSGGLLERL----PLTGVDVVSLDWTVDMADGRRRLGPNVAIQ------------GNVDPGVLFGSKEFITNRINDTVKKAGKGKVGTPEENFAHFFEIAKGLRY
10HHPRED-l1gte_A0.1580.8351.920threading_10IVTNVSPRIVRGPGQSSSEKTAAYWCQSVT--ELKADPIVIASIMCSYDWMELSRKAEASGADALLSCPHG----LACQDPELVRNICRQVQIPPTDIARAAKEGGADGVTAAGKRTTYGGVSGTAIALRAVTTIARALPGFPILATGGIDSAESGLQFLHSGASVLSAVQNQDFTVIQDYCTGLKALLYLKSIQGWDGPYLQRKKIIAEEKL----ERKPFI-PKKPIPAIKDVIGYLGTVVAVIDEEMCINCGKCYMTCGYQAQFDPETPTVTDTCTGCTLCLSVCPIIDCIRMVSRTT-PYEPKRGL-----------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.712 to 1t5jA
SCOP code=a.209.1.1
TM-score=0.393 to 1durA
SCOP code=d.58.1.1
TM-score=0.566 to 1fp3A
SCOP code=a.102.1.3
TM-score=0.441 to 1durA
SCOP code=d.58.1.1
TM-score=0.705 to 1t5jA
SCOP code=a.209.1.1