Template-based Modeling Results for YCHO_ECOLI


  Submitted Primary Sequence

>Length 464
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
CCCEEEEEEEHHHHHHHHHHECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCEEEEHHHEECCCEEEEHHCCEEECCCCEEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCHHHHCCCCCCEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHCCCCHHHHCCCCHHHCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCCHHHHHHCCCEEECCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEECCEEEEEEEECCEEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
55310121010000000000002132213332222133223212311223333311220020022002112223222212102110112023101310231023103210101010101331412112000012012232100002100212231100000000000121000000000002133412100000100021010000000101223322211222113110000201011121010100011000020101332222312200100010000110101011221333343110001000101220332112121231221221112313223211111212210101012222323312101020202142101101020202001112111122221010001313214322110100000212412212222020101211112232325355
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
1MUSTER3cu7A0.1170.9980.891threading_1YPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPVSYVYLEVVSKHFSKSKRMPITYDNVRVYSLNDDLKPAKRETVLTFIDPEGSEVDMVEEIDHIGIIPRYGMWTIKAKYKEDFSTTGTAYFEVKEYVLPHFSVSIEEYNFIGYKNFKNFEITIKARYFYNKVVTEADVYITFDLKDDQKEMMQTAMQNTMLINGIAQVTFDSETAVKELSYYSLEDLNNKYLYIAVTVGGFSEEAEIPGIKYVLSPKLNLVATPLKPGIPYPIKVQVKDQLVGGVPVTLNAQTIDVNQETSDLDPSKSVTDGVSFVLNLPSGVTVLEFNVKTDAPDLPEENQARAIAYLSQSYLYIDWTDNHKALLVGEHLNIIVTPKSPYIHYNYLILSKGKIIHFGTREKFSDASYQSINIPV-TQNMVPSSRLLVYYIVTGEQTAELVSDSVWLNIEEKQVHLSPDADAYSP
2SPARKS3gdba0.1110.9530.933threading_2LDSMVFWEGLVTPDVIDAGHRNGVPVYFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGTGDLVKPLGEKMRQFMLYSKEYAAKVNHPGLGEYNYQFMQPEGDKVPADNFFANFNWDKAKNDYTIATANNPYDVFAGQGGILDENGKLRLSLGLDTITSLGKFFTGYQGDPTGQKPGDKDWYGI-ANLVADRTPAVGNTFTTGHGKKWFVDGKVSKDSEWNYRSVSGVLPTWRWWQTRAEYDAYNGGNSLKFSGDVAGKTDQDVRLYSTKLEVTKTKLRVAHKGGKGS--------KVYMAFSTTPDYKFDDADAWKELTLSDNEFDLSSLAGKTILFFEAVKDYQFNLGQLTISDNHQESVVKQSLKNAQEAEAVVQFKGNKDADFY--EVYEKDGDSWKLLTGSSRSASAQGTTQELKVVAVGKNGVRSEAATTTFDWGMTVK-----------
3PROSPECT22qdzA0.0690.8791.951threading_3LLPGARDLNRIDDRQRKEQLQRDIERAATSGHTGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATDGKPLEGTRDRMMVFSAVFDIDQAIYNINNGGKTGNITIVPADEYG----YSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTLNDTLGLYIGNRYYRDAGHDAERNYDLMYTRLDLQTGYSTYRNLLKTRYGQYQSAGN-SRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSSDVTVGMQYSTQRGYFGDLSFTRGVGVGNVSRFNGSLAWTQQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVNHPDARTIRMAVRFDLPYARMSFTY--------------------SKPVGAQPGGAPRAPVWLYINAGLS-------------------------------F
4PPA-I2qdzA0.0790.9271.263threading_4LNRIDDRQRKEQLQRDIERAATSGHTVTVHGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYDGKPLEGTRDRMMVFSAMPGWQVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGNDTLGLYIGNRYYRDAGHDAERNYDLMYSVDLQTGYSTYRNLLKTRYGQYQSAGN-SRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKDVTVGMQYSTQRGYFGDLSFTRGVGVGNVSRFNGSLAWTRQLLNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVG-ADVGALKSNHPDARTIRMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF--------------------------------
5HHPRED-l3pe9_A0.0670.1921.160threading_5---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKLTAPKSNVVAYGNEFLKITATASDDGKISRVDFLVDGEV------IGSDREAPYEYEWKA---V---EGNHEISVIAYDDDDAASTPDSVKIFVKQAR------------
6HHPRED-g3pe9_A0.0670.1921.338threading_6---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVKLTAPKSNVVAYGNEFLKITATASDSGKISRVDFLVDGEVI------GSDREAPYEYEWK---AV---EGNHEISVIAYDDDDAASTPDSVKIFVKQAR------------
7SP31nqea0.0780.9630.505threading_7ANRFEQPRSTVLAPTTVVTR-----QDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSASHVLVLGVRLNLAGVSGSADLSQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIGTEISAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGGFLSKTLYGALEHNFFVRGYGYDNRTNDTRKLYSQSWDAGLRYNGELIKSQLITSYSHSKDYNYATLDEMKQYTVQWANNVIVGHGSIGAGVDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFFEGAARSDDNSQFGRHGTWQTSAGWEFIEGY--RFIASYGTSYKAPNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGV------NWRISGYRNDVSDL--IDYDDHTLKYYNEGKARIKDTGPLTHTVAITDTPLLRRAKQQVKYQLDWQLYDFD--WGITYQYLGTRYDKDYSSYPYQT
8SAM-T991xqrA10.1670.2200.634threading_8---------------------------------------------------------------------------------------------------------LSQPPPTAGEAEQAADQQEREGALELLADLCENDNAADFCQLSGHLLVGRYLEAGAAGLRWRA------------------------------------------------------------------AQLIGTCSQNVAAIQEQV-------------------------------LGLGALRK----------------------LLRLLDRDACDTV------------------------------------------------------------------------------------------------------------------------------------------
9MUSTER3fcsA0.1100.9570.865threading_9FSSVVTQAGELVLGAPGGLGLLAQAPVADIFSSYRPGILLWHVSSQSLSFDSSNPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVE---------ILDSYYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLLVGPLYMESRADRKLAEVGRVYLFLQPYGRFGSAIAPLGDLDRGYNDIAVAAPYGGPSGRGQVLVFLGQSERSRPSSPFPTGSAFGFSLRGAVDIDGYP----DLIVGAYGANQVAVYRAQ------PVVKASVQLLVQDSLNPAVSCVLPQTKTPVSCFNIQMCVGAGHNIPQKLSLNQLDRQKPRQGRRVLLLGSQQALDLGGKHSPTTMAFLRDEADFRDKLSPIVLSLNVSLPPMAPAVVLHGDTHVQEQGEDDVCVPQLQLTASVTGSPLLVGADNVLELQMDAANE-GEGAYEAELAVHAHYMRALSNVEFERLIC
10SPARKS2w91a0.1110.9550.908threading_10LDSMVFWEGLVTPDVIDAGHRNGVPVYFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGTGDLVKPLGEKMRQFMLYSKEYAAKVNHPGLGEYNYQFMQPEGDKVPADNFFANFNWDKAKNDYTIATANNPYDVFAGQGGILDENGKLRLSLGLDTITSLGKFFTGYQGDPTGQKPGDKDWYGI-ANLVADRTPAVGNTFTTGHGKKWFVDGKVSKDSEWNYRSVSGVLPTWRWWQTRAEYDAYNGGNSLKFSGDVAGKTDQDVRLYSTKLEVTKTKLRVAHKGGKGS--------KVYMAFSTTPDYKFDDADAWKELTLSDNEFDLSSLAGKTILFFEAVKDYQFNLGQLTISDNHQESVVKQSLKNAQEAEAVVQFKGNKDADFY--EVYEKDGDSWKLLTGSSRSASAQGTTQELKVVAVGKNGVRSEAATTTFD---WGMTVKD-------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.465 to 1cwvA
SCOP code=b.1.14.1
TM-score=0.536 to 1phoA
SCOP code=f.4.3.1
TM-score=0.436 to 1gmmA
SCOP code=b.18.1.10
TM-score=0.434 to 1phoA
SCOP code=f.4.3.1
TM-score=0.502 to 1hxuA
SCOP code=f.4.3.1